CX289400

Overview
NameCX289400
Unique NameCX289400
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length411
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A2_VITVI (40S ribosomal protein S3a-2 OS=Vitis vinifera GN=GSVIVT00031140001 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.413e-46
Identity = 87/98 (88.78%), Postives = 93/98 (94.90%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL N+E+HAYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLVRKW TLIEA+V
Sbjct:   28 DWYDIKAPSIFSVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQNDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 177.948 bits (450), Expect = 1.359e-44
Identity = 85/98 (86.73%), Postives = 92/98 (93.88%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F VRN+GKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E+ AYRKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+V
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 174.866 bits (442), Expect = 1.151e-43
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F  RNVGKTLVTRTQGTKIASEGLKHRVFEVSL DL N+E+H+YRKIRLRAEDVQGKNVLTNFWGM+ TTDKLRSLV+KW +LIEA+V
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 1.151e-43
Identity = 82/98 (83.67%), Postives = 92/98 (93.88%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F VRNVGKTLVTRTQGTKIASEGL+HRVFE+SL DL  +E+H++RKIRLRAED+QGKNVLTNFWGM+FTTDKLRSLVRKW +LIEA+V
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.151e-43
Identity = 84/98 (85.71%), Postives = 91/98 (92.86%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F VRNVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E+ AYRKIRLRAEDVQG+NVLTNFWGM+FTTDKLRSLVRKW TLIEA+V
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.711e-43
Identity = 82/98 (83.67%), Postives = 91/98 (92.86%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F ++NVGKTLVTRTQGTKIASEGLKHRVFEVSL DL  +E+ ++RKIRLRAEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+V
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.272e-42
Identity = 82/98 (83.67%), Postives = 93/98 (94.90%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F+V+NVGKTLV+RTQGTKIASEGLKHRVFE+SL DL  +E++A+RKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+V
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 170.244 bits (430), Expect = 2.834e-42
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYD+KAP  F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL N+E++AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIEA+V
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.407e-41
Identity = 81/98 (82.65%), Postives = 89/98 (90.82%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAPS F  RNVGKTLV+RTQGTKIASEGLKHRVFEVSL DL  +E+ AYRKIRLRAEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++V
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHV 125          
BLAST of CX289400 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.399e-41
Identity = 81/98 (82.65%), Postives = 90/98 (91.84%), Query Frame = 3
Query:  117 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYV 410
            DWYDIKAP+ F+ +NVGKTLV+RTQGTKIASEGLKHRVFEV L DL  +E+ AYRKIRLRAEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+V
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHV 125          
The following BLAST results are available for this feature:
BLAST of CX289400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 157
Match NameE-valueIdentityDescription
RS3A2_VITVI9.413e-4688.7840S ribosomal protein S3a-2 OS=Vitis vinifera GN=G... [more]
RS3A_ORYSJ1.359e-4486.7340S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A_HELAN1.151e-4385.7140S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CATRO1.151e-4383.6740S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A1_VITVI1.151e-4385.7140S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_TOBAC5.711e-4383.6740S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A_CICAR1.272e-4283.6740S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A2_ARATH2.834e-4282.6540S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_BRARA1.407e-4182.6540S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]
RS3A_DAUCA2.399e-4182.6540S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]

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Properties
Property NameValue
Genbank descriptionC02012G01SK IF1 Citrus clementina cDNA clone C02012G01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289400 ID=CX289400; Name=CX289400; organism=Citrus clementina; type=EST; length=411bp
AGCGGAGCCGTCTCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAG
AACAAGAGGATTTCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGA
TCCGTTTGCCAAGAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCC
GCGTCAGAAATGTTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAG
ATTGCATCAGAAGGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGA
TCTTCTCAATGAAGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTG
AAGATGTCCAAGGGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTC
ACTACAGACAAGCTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGA
AGCTTACGTGG
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