CX289411

Overview
NameCX289411
Unique NameCX289411
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length395
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 3.403e-56
Identity = 100/129 (77.52%), Postives = 111/129 (86.05%), Query Frame = 1
Query:    7 CDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPPN 393
            CD  RKNAKVVTID YEDV  N E +LQKAVANQPVSVAIE GG AFQLY SGIFTG+CGT+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SYP+KKG+NPPN
Sbjct:  225 CDVNRKNAKVVTIDSYEDVTPNSETSLQKAVANQPVSVAIEAGGRAFQLYSSGIFTGKCGTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPN 352          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 1.095e-54
Identity = 96/131 (73.28%), Postives = 111/131 (84.73%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPPN 393
            G+CD  RKNAKVVTID YEDVP   E++L+KAVA+QP+S+AIE GG AFQLY+SGIF G CGT LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SYPIK G+NPPN
Sbjct:  231 GTCDQIRKNAKVVTIDSYEDVPTYSEESLKKAVAHQPISIAIEAGGRAFQLYDSGIFDGSCGTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPN 360          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 1.867e-54
Identity = 98/130 (75.38%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPP 390
            G CD  R+NAKVV+ID +EDVP NDEK+LQKAVA+QPVSVAIE GG  FQLY SG+F+GRCGTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASYP K G NPP
Sbjct:  236 GKCDINRENAKVVSIDGFEDVPQNDEKSLQKAVAHQPVSVAIEAGGREFQLYHSGVFSGRCGTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPP 364          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 4.760e-50
Identity = 88/129 (68.22%), Postives = 106/129 (82.17%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNP 387
            G C+++ KN++VV+ID YEDVP  DE AL+KA++ QPVSVAIE GG  FQ Y+SGIFTG CGT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASYP+K   NP
Sbjct:  239 GKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPVSVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASYPVKYSPNP 367          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.119e-50
Identity = 88/130 (67.69%), Postives = 109/130 (83.85%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPP 390
            G CD YRKNAKVV ID YEDVP+N+EKALQKAVA+QPVS+A+E GG  FQ Y+SGIFTG+CGT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SYP+K G NPP
Sbjct:  112 GVCDQYRKNAKVVKIDSYEDVPVNNEKALQKAVAHQPVSIALEAGGRDFQHYKSGIFTGKCGTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPP 240          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 2.362e-49
Identity = 89/129 (68.99%), Postives = 108/129 (83.72%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNP 387
            G C++  KN++VVTID YEDVP  DE AL++AV+ QPVSVAI+ GG AFQ Y+SGIFTG+CGT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASYP+K   NP
Sbjct:  194 GKCNSLLKNSRVVTIDGYEDVPSKDETALKRAVSYQPVSVAIDAGGRAFQHYQSGIFTGKCGTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASYPVKYSPNP 321          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 6.873e-49
Identity = 92/131 (70.23%), Postives = 106/131 (80.92%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNP 387
            G C+  +++ KVV+ID +EDVP NDE +LQKAVA+QPVSVAI+ GG  FQLY+SG+FTGRCGT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASYPIKKG NP
Sbjct:  251 GKCNLAKRSRKVVSIDGFEDVPENDELSLQKAVAHQPVSVAIDAGGREFQLYDSGVFTGRCGTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNP 380          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CYSEP_RICCO (Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 5.097e-44
Identity = 85/132 (64.39%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTE-NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPPN 393
            G+CD  ++NA  V+ID +E+VP NDE AL KAVANQPVSVAI+ GG  FQ Y  G+FTG CGT LDHGV  VGYGT  +G  YW VKNSWG  WGE GYIRMER ++    G CGIAMEASYPIKK  N P+
Sbjct:  220 GTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTGSCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDK-EGLCGIAMEASYPIKKSSNNPS 350          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.136e-43
Identity = 82/132 (62.12%), Postives = 97/132 (73.48%), Query Frame = 1
Query:    1 GSCDTYRKNAKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIKKGQNPPN 393
            G+C +   N+ VV+ID ++DVP N+E AL +AVANQP+SV+IE  G  FQ Y  G+FTGRCGT LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASYPIK   NP N
Sbjct:  223 GTCASNLLNSPVVSIDGHQDVPANNENALMQAVANQPISVSIEASGYGFQFYSEGVFTGRCGTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASYPIKTSANPKN 353          
BLAST of CX289411 vs. ExPASy Swiss-Prot
Match: CPR1_ARATH (Probable cysteine proteinase At3g19400 OS=Arabidopsis thaliana GN=At3g19400 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.998e-41
Identity = 76/125 (60.80%), Postives = 96/125 (76.80%), Query Frame = 1
Query:    1 GSCDTYRKN-AKVVTIDDYEDVPLNDEKALQKAVANQPVSVAIEGGGMAFQLYESGIFTGRCGTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYPIK 372
            G C+  + N  +VVTID YEDVP +DEK+L+KAVA+QPVSVAIE    AFQLY+SG+ TG CG SLDHGV  VGYG+ +G DYWI++NSWG +WG+ GY++++RN+     GKCGIAM  SYP K
Sbjct:  226 GLCNADKNNNTRVVTIDGYEDVPRDDEKSLKKAVAHQPVSVAIEASSQAFQLYKSGVMTGTCGISLDHGVVVVGYGSTSGEDYWIIRNSWGLNWGDSGYVKLQRNIDDPF-GKCGIAMMPSYPTK 349          
The following BLAST results are available for this feature:
BLAST of CX289411 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
ORYA_ORYSJ3.403e-5677.52Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH1.095e-5473.28Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYB_ORYSJ1.867e-5475.38Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
GCP1_ARATH4.760e-5068.22Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSPL_SOLLC8.119e-5067.69Low-temperature-induced cysteine proteinase (Fragm... [more]
CYSP4_BRANA2.362e-4968.99Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CYSP1_ORYSJ6.873e-4970.23Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
CYSEP_RICCO5.097e-4464.39Vignain OS=Ricinus communis GN=CYSEP PE=1 SV=1[more]
CYSP_HEMSP1.136e-4362.12Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR1_ARATH8.998e-4160.80Probable cysteine proteinase At3g19400 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC02012H03SK IF1 Citrus clementina cDNA clone C02012H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289411 ID=CX289411; Name=CX289411; organism=Citrus clementina; type=EST; length=395bp
GGTAGCTGTGACACATATCGGAAAAATGCCAAAGTAGTTACAATTGATGA
CTATGAAGATGTTCCCCTAAATGACGAGAAAGCTTTGCAAAAGGCAGTTG
CAAATCAACCCGTGAGTGTTGCCATTGAAGGAGGTGGCATGGCATTCCAG
TTATATGAATCGGGTATATTTACGGGAAGATGTGGGACATCTCTGGACCA
TGGTGTTACTGCTGTTGGATATGGCACAGAAAATGGAGCTGATTACTGGA
TTGTGAAGAATTCATGGGGCAGTAGCTGGGGAGAGGGTGGCTATATTAGG
ATGGAGCGTAACGTGGCTGGCACTCTCACGGGCAAGTGTGGAATTGCCAT
GGAGGCCTCATATCCCATAAAGAAAGGCCAAAATCCTCCCAACCC
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