CX289415

Overview
NameCX289415
Unique NameCX289415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length413
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: CAF1B_HUMAN (Chromatin assembly factor 1 subunit B OS=Homo sapiens GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.728e-19
Identity = 53/148 (35.81%), Postives = 81/148 (54.73%), Query Frame = 3
Query:   24 MKGGTLQINWHDTKPVLTLDF-HPISGL---LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTE---------------TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLS 410
            MK  T +I WH+ +PV +LDF H  +G    LA+ G D +++IW +  G   K I    + ++L+ H  AVN++RFSP GE LASG D   +++WK++  +                 + W V+K L  H +DV D+ W+TDG  + S
Sbjct:    1 MKVITCEIAWHNKEPVYSLDFQHGTAGRIHRLASAGVDTNVRIWKVEKGPDGKAI--VEFLSNLARHTKAVNVVRFSPTGEILASGGDDAVILLWKVNDNKEPEQIAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWATDGNLMAS 146          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: CAF1B_CHICK (Chromatin assembly factor 1 subunit B OS=Gallus gallus GN=CHAF1B PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.480e-19
Identity = 52/148 (35.14%), Postives = 81/148 (54.73%), Query Frame = 3
Query:   24 MKGGTLQINWHDTKPVLTLDF-HPISGL---LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTE---------------TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLS 410
            MK  T +I WH+ +PV +LDF H   G    LA+ G D  +++W +  G   K I    + ++L+ H  AVN++RFSP GE LASG D   +++WKL+ ++                 + W V+K L  H +DV D+ W++DG ++ S
Sbjct:    1 MKVITCEIAWHNKEPVYSLDFQHGTDGKINRLASAGVDTAVRVWKVEKGPDGKAI--VEFLSNLARHTKAVNVVRFSPSGEVLASGGDDAVILLWKLNDSKELEPLAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWTSDGNYMAS 146          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: CAF1B_MOUSE (Chromatin assembly factor 1 subunit B OS=Mus musculus GN=Chaf1b PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.080e-17
Identity = 51/148 (34.46%), Postives = 79/148 (53.38%), Query Frame = 3
Query:   24 MKGGTLQINWHDTKPVLTLDFHPISGL----LATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTE---------------TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLS 410
            MK  T +I WH+ +PV +LDF   +      LA+ G D  ++IW +  G   K I    + ++L+ H  AVN++RFSP GE LASG D   +++WK++ ++                 + W V+K L  H +DV D+ W+TDG  + S
Sbjct:    1 MKVITCEIAWHNKEPVYSLDFQHGATWKIHRLASAGVDTAVRIWKLERGPDGKAI--VEFLSNLARHTKAVNVVRFSPTGEILASGGDDAVILLWKMNDSKEPEQIAFQDEEEAQLNKENWTVVKTLRGHLEDVYDICWATDGNLMTS 146          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: CAC2_YEAST (Chromatin assembly factor 1 subunit p60 OS=Saccharomyces cerevisiae GN=CAC2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 9.463e-14
Identity = 39/107 (36.45%), Postives = 60/107 (56.07%), Query Frame = 3
Query:   24 MKGGTLQINWHDTKPVLTLDFHPISG--LLATGGADYDIKIWLINSGEKQ-----KKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTETGQ 323
            M+   LQI WHD++PV +L F   S    L T G D  ++IW +N  E       +KI +  +  SL++H  A+N++RF+  G+ LAS  D G++++WK     T Q
Sbjct:    1 MEASHLQIYWHDSQPVYSLTFQKNSANDKLFTAGGDNKVRIWKLNRDENGQNGGVRKIESLDFLGSLTHHEQAINVIRFNSKGDVLASAGDDGQVLLWKQEDPNTQQ 107          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: YEG3_SCHPO (Uncharacterized WD repeat-containing protein C26H5.03 OS=Schizosaccharomyces pombe GN=SPAC26H5.03 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 4.696e-13
Identity = 48/149 (32.21%), Postives = 70/149 (46.98%), Query Frame = 3
Query:   24 MKGGTLQINWH-----DTKPVLTLDFHPIS-GLLATGGADYDIKIWLINSGEKQKKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTE-------------TGQAWKVLKNLSFHRKDVLDLQWSTDGAFLLSG 413
            M+   LQI WH     D  P+ ++DF   S    AT G D  I+IW + + E   K+    Y ++LS H  AVN++RF+P G  LA+  D G +++W    T                + WKV         ++ DL WS D  FL++G
Sbjct:    1 MRAEVLQIRWHYDANDDHTPIYSVDFQKNSLNKFATCGGDSKIRIWQLITSESSTKV---EYLSTLSRHTQAVNVVRFNPEGNILATAGDEGTIMLWVPTNTPITTLADDAEELALAKEYWKVKIVCRSMGSEIYDLCWSVDSNFLIAG 146          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: HIR1_KLULA (Protein HIR1 OS=Kluyveromyces lactis GN=HIR1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.785e-12
Identity = 46/137 (33.58%), Postives = 66/137 (48.18%), Query Frame = 3
Query:   54 HDTKPVLTLDFHPISGLLATGGADYDIKIWLINSGEKQKKIPTASYQ--------NSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTETG----------QAWKVLKNLSFHRKDVLDLQWSTDGAFLLS 410
            H +  V T D  P S  LATGG D  I+IW I    K    P AS          +++S H  +V  ++FSP G+ LASG+D   L+IW+L    T           + W V + L  H  D+ D+ W+ D + ++S
Sbjct:   15 HKSYEVYTCDVSPDSQRLATGGLDGKIRIWSIPDILKFASNPNASTDKDILMKPLSTMSRHAGSVTTVKFSPDGKYLASGSDDRILLIWELEGGTTQPMFGAESTDIEHWNVRRRLVAHDNDIQDICWAPDSSIMVS 151          
BLAST of CX289415 vs. ExPASy Swiss-Prot
Match: HIR1_CANGA (Protein HIR1 OS=Candida glabrata GN=HIR1 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.741e-11
Identity = 41/129 (31.78%), Postives = 62/129 (48.06%), Query Frame = 3
Query:   69 VLTLDFHPISGLLATGGADYDIKIWLINS------GEKQKKIPTASYQNSLSYHGSAVNILRFSPCGEQLASGADGGELIIWKLHTTETG---------QAWKVLKNLSFHRKDVLDLQWSTDGAFLLS 410
            + T+D  P    +ATGG D  I+IW +++      GE      T     S+S H  +V  ++FSP G  LASG+D   L+IW +     G         + W V K L  H  D+ D+ W+ D + L++
Sbjct:   20 IYTVDVSPDGKRVATGGLDGKIRIWSVDALVSAAAGESGVDRDTHRPLASMSRHTGSVTCVKFSPDGNYLASGSDDRILLIWAMDEENHGGSFGSEGEKEHWTVRKRLVAHDNDIQDICWAPDSSILVT 148          
The following BLAST results are available for this feature:
BLAST of CX289415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CAF1B_HUMAN5.728e-1935.81Chromatin assembly factor 1 subunit B OS=Homo sapi... [more]
CAF1B_CHICK7.480e-1935.14Chromatin assembly factor 1 subunit B OS=Gallus ga... [more]
CAF1B_MOUSE1.080e-1734.46Chromatin assembly factor 1 subunit B OS=Mus muscu... [more]
CAC2_YEAST9.463e-1436.45Chromatin assembly factor 1 subunit p60 OS=Sacchar... [more]
YEG3_SCHPO4.696e-1332.21Uncharacterized WD repeat-containing protein C26H5... [more]
HIR1_KLULA1.785e-1233.58Protein HIR1 OS=Kluyveromyces lactis GN=HIR1 PE=3 ... [more]
HIR1_CANGA5.741e-1131.78Protein HIR1 OS=Candida glabrata GN=HIR1 PE=3 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC02012H07SK IF1 Citrus clementina cDNA clone C02012H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289415 ID=CX289415; Name=CX289415; organism=Citrus clementina; type=EST; length=413bp
CAATCTGGAAAATCAAAACAAAAATGAAAGGTGGCACACTTCAAATTAAC
TGGCACGACACAAAACCAGTCCTAACCCTAGATTTCCACCCGATATCCGG
TTTGCTCGCCACCGGCGGCGCCGACTACGACATCAAGATTTGGCTAATAA
ATTCAGGCGAAAAACAGAAGAAAATCCCAACAGCTTCTTATCAAAATAGC
CTCTCTTATCATGGTTCTGCTGTAAATATCCTTCGCTTCTCTCCTTGCGG
AGAACAACTTGCTTCTGGTGCCGATGGTGGCGAGCTGATCATATGGAAGT
TACACACAACAGAAACTGGACAAGCATGGAAAGTCCTCAAGAATTTGTCA
TTTCACCGCAAGGATGTTCTAGACCTGCAGTGGTCGACTGATGGTGCATT
TCTACTCTCTGGA
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