CX289417

Overview
NameCX289417
Unique NameCX289417
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length378
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_PEA (Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 9.633e-21
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRLF 376
            +YVNKKFSNQ+KATIGADFLTKE QFEDRLF
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVQFEDRLF 57

HSP 2 Score: 57.7658 bits (138), Expect = 9.633e-21
Identity = 28/28 (100.00%), Postives = 28/28 (100.00%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            MPSRRRTLLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MPSRRRTLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.895e-20
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRLF 376
            +YVNKKFSNQ+KATIGADFLTKE QFEDRLF
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVQFEDRLF 57

HSP 2 Score: 54.6842 bits (130), Expect = 7.895e-20
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SRRRTLLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MASRRRTLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_PRUAR (Ras-related protein Rab7 OS=Prunus armeniaca PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 8.403e-19
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRLF 376
            +YVN+KFSNQ+KATIGADFLTKE QFEDRLF
Sbjct:   27 QYVNRKFSNQYKATIGADFLTKEVQFEDRLF 57

HSP 2 Score: 52.373 bits (124), Expect = 8.403e-19
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SRRR LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_GOSHI (Ras-related protein Rab7 OS=Gossypium hirsutum GN=RAB7 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.848e-18
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRLF 376
            +YVN+KFSNQ+KATIGADFLTKE QF+DRLF
Sbjct:   27 QYVNRKFSNQYKATIGADFLTKEVQFDDRLF 57

HSP 2 Score: 52.373 bits (124), Expect = 1.848e-18
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SRRR LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MASRRRMLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7_MESCR (Ras-related protein Rab7A OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 5.284e-18
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRLF 376
            ++VNKKFSNQ+KATIGADFLTKE QFEDRLF
Sbjct:   27 QFVNKKFSNQYKATIGADFLTKELQFEDRLF 57

HSP 2 Score: 50.447 bits (119), Expect = 5.284e-18
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SRRR LLK+IILGDSGVGKTSLMNQ+
Sbjct:    1 MASRRRKLLKIIILGDSGVGKTSLMNQF 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_RAT (Ras-related protein Rab-7a OS=Rattus norvegicus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_RABIT (Ras-related protein Rab-7a OS=Oryctolagus cuniculus GN=RAB7A PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_PONAB (Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7A PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_MOUSE (Ras-related protein Rab-7a OS=Mus musculus GN=Rab7a PE=1 SV=2)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28
[Close]
BLAST of CX289417 vs. ExPASy Swiss-Prot
Match: RAB7A_HUMAN (Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7A PE=1 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.520e-16
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 2 
Query:  284 RYVNKKFSNQFKATIGADFLTKEAQFEDRL 373
            +YVNKKFSNQ+KATIGADFLTKE   +DRL
Sbjct:   27 QYVNKKFSNQYKATIGADFLTKEVMVDDRL 56

HSP 2 Score: 50.447 bits (119), Expect = 3.520e-16
Identity = 24/28 (85.71%), Postives = 26/28 (92.86%), Query Frame = 3 
Query:   90 MPSRRRTLLKVIILGDSGVGKTSLMNQY 173
            M SR++ LLKVIILGDSGVGKTSLMNQY
Sbjct:    1 MTSRKKVLLKVIILGDSGVGKTSLMNQY 28
The following BLAST results are available for this feature:
BLAST of CX289417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RAB7_PEA9.633e-2190.32Ras-related protein Rab7 OS=Pisum sativum PE=2 SV=... [more]
RAB7_CENCI7.895e-2090.32Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB7_PRUAR8.403e-1987.10Ras-related protein Rab7 OS=Prunus armeniaca PE=2 ... [more]
RAB7_GOSHI1.848e-1883.87Ras-related protein Rab7 OS=Gossypium hirsutum GN=... [more]
RAB7_MESCR5.284e-1887.10Ras-related protein Rab7A OS=Mesembryanthemum crys... [more]
RAB7A_RAT3.520e-1680.00Ras-related protein Rab-7a OS=Rattus norvegicus GN... [more]
RAB7A_RABIT3.520e-1680.00Ras-related protein Rab-7a OS=Oryctolagus cuniculu... [more]
RAB7A_PONAB3.520e-1680.00Ras-related protein Rab-7a OS=Pongo abelii GN=RAB7... [more]
RAB7A_MOUSE3.520e-1680.00Ras-related protein Rab-7a OS=Mus musculus GN=Rab7... [more]
RAB7A_HUMAN3.520e-1680.00Ras-related protein Rab-7a OS=Homo sapiens GN=RAB7... [more]

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Properties
Property NameValue
Genbank descriptionC02012H09SK IF1 Citrus clementina cDNA clone C02012H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289417 ID=CX289417; Name=CX289417; organism=Citrus clementina; type=EST; length=378bp
AATAACAACTACGGAGCACATCAAAACGATCAACTGATTTGCGTTTGGAG
GTAGATCGTTCGATCGATTGACCGATTTTCCCCAGAACGATGCCGTCTCG
TAGAAGAACTCTCCTCAAGGTCATCATCCTCGGCGACAGCGGGGTGGGCA
AGACCTCTTTGATGAATCAGTATCCTTTCGAGTTCTTTTTATTTTTCTAT
TTGAAGTAATTGTGTTTACTTTAAGATTTATGGCAGATTGTTCTCTGTGT
TTTGATGTTGATTTGGCTCGACATTTAACTTAAAGATATGTAAACAAGAA
GTTTAGCAATCAGTTCAAGGCGACCATCGGAGCTGATTTCTTGACAAAGG
AAGCGCAGTTTGAAGATAGGCTCTTCAC
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