CX289666

Overview
NameCX289666
Unique NameCX289666
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length409
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289666 vs. ExPASy Swiss-Prot
Match: YHIT_SULSO (Uncharacterized HIT-like protein SSO2163 OS=Sulfolobus solfataricus GN=SSO2163 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.799e-12
Identity = 32/80 (40.00%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:    3 DTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKARD 242
            D  P++ GH+L+VP++H+         V+  +C  V  IS A+ KA  AD   +L N G +AGQV+FH+H HI+P  ++D
Sbjct:   28 DKFPITPGHTLVVPRTHYENFLEISEDVIPYLCTAVRKISIAVKKALKADGIRILTNIGKSAGQVVFHSHFHIVPTWSQD 107
[Close]
BLAST of CX289666 vs. ExPASy Swiss-Prot
Match: YHI2_MYCTU (Uncharacterized HIT-like protein Rv1262c/MT1300 OS=Mycobacterium tuberculosis GN=Rv1262c PE=4 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 5.787e-11
Identity = 35/94 (37.23%), Postives = 53/94 (56.38%), Query Frame = 3 
Query:    3 DTNPLSLGHSLIVPKSHFSCLDATPPSVVAAMCAKVPLISNAIMKATDADSFNLLVNNGAAAGQVIFHTHIHIIPRKARDCLWTSES--LRRRP 278
            D  P + GH+L++PK H   L  TPP  +A M A    I+ A      AD+ ++ +N+G AA Q +FH H+H++P +  D L  ++   LRR P
Sbjct:   29 DIRPFTRGHTLVLPKRHTVDLTDTPPEALADMVAIGQRIARAARATKLADATHIAINDGRAAFQTVFHVHLHVLPPRNGDKLSVAKGMMLRRDP 122
The following BLAST results are available for this feature:
BLAST of CX289666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YHIT_SULSO1.799e-1240.00Uncharacterized HIT-like protein SSO2163 OS=Sulfol... [more]
YHI2_MYCTU5.787e-1137.23Uncharacterized HIT-like protein Rv1262c/MT1300 OS... [more]
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Properties
Property NameValue
Genbank descriptionC02015H02SK IF1 Citrus clementina cDNA clone C02015H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289666 ID=CX289666; Name=CX289666; organism=Citrus clementina; type=EST; length=409bp
TGGATACCAATCCTCTGAGTCTTGGGCACTCTCTTATTGTCCCGAAATCT
CATTTCTCTTGCTTGGATGCGACTCCTCCATCTGTGGTAGCTGCAATGTG
CGCAAAGGTACCTTTAATCAGCAATGCAATCATGAAAGCCACAGATGCTG
ATTCATTCAACTTGCTGGTTAACAATGGTGCAGCTGCTGGCCAGGTTATA
TTTCACACTCATATCCATATAATTCCCAGAAAGGCACGTGATTGCTTATG
GACTTCTGAGAGTTTGAGGCGGCGTCCCTTAAAGATAGACAAGGAAACCT
CTCAACTGGCTGATCAAGTACGCGAAAAGTTATCAAACATTTGTGAATGT
AGTAGCAAGGGTCAAGAATCCAGTCTCTCATGAATCGTGATGTTTTATTG
GATCAGTGA
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