CX289721

Overview
NameCX289721
Unique NameCX289721
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 152.14 bits (383), Expect = 2.683e-36
Identity = 82/226 (36.28%), Postives = 129/226 (57.08%), Query Frame = 2
Query:    8 VEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHN-FVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            VEKK++  G +MPS + TGG R+ +YLD SEPKH +LK      LK S      E  ++   LFD++EKELS K    +        FNFL+++  G +P AD ++  +   ++ KW+   + P +SI + + +EE  +H+F+ P ALV  DY +L+  F+E  G+ +V+   D+ G+++EEA HNLLF   FN +GG  I  P ++  I      +  +L  E++
Sbjct:  131 VEKKDLFTGTYMPSTELTGGYRILSYLDPSEPKHEKLKNLLFFLLKSSRNRIFPEFQATYSELFDSLEKELSLKGKADFGGSSDGTAFNFLARAFYGTNP-ADTKLKADAPGLITKWVLFNLHPLLSIGLPRVIEEPLIHTFSLPPALVKSDYQRLYEFFLESAGEILVE--ADKLGISREEATHNLLFATCFNTWGGMKILFPNMVKRIGRAGHQVHNRLAEEIR 353          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.504e-36
Identity = 77/225 (34.22%), Postives = 125/225 (55.56%), Query Frame = 2
Query:    8 VEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            VEKK++  G +MPS + TGG R+ +YLD SEP H +LK    + +K      + E  SS   L + VE +L+ K   ++  P ++  FNFLS++  G  P  D  + ++  S++ KW+   + P +S+ + + +EE  LHS   P  LV  DY++L+ F       V+    ++ G++++EA HN+LF + FN++GGF I  P L+  I      L  KL  E++
Sbjct:  149 VEKKDLFTGTYMPSTELTGGYRILSYLDPSEPNHTKLKQLLFNLIKNRRDYVIPEFSSSFTDLCEVVEYDLATKGKAAFNDPAEQAAFNFLSRAFFGVKP-IDTPLGKDAPSLISKWVLFNLAPILSVGLPKEVEEATLHSVRLPPLLVQNDYHRLYEFFTSAAGSVLDEA-EQSGISRDEACHNILFAVCFNSWGGFKILFPSLMKWIGRAGLELHTKLAQEIR 371          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 5.595e-34
Identity = 72/225 (32.00%), Postives = 127/225 (56.44%), Query Frame = 2
Query:    8 VEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            VEKK++  G +MPS K TGG RV +YLD SEP+HAQLK      LK SS   + +  ++   LF+ +E EL++    ++    ++  F FL ++   ++P+ + ++  +  +++  W+   + PT+ + +   L+E  LH+F  P  L+   YNKL+++ +     V+++  ++ G+ K+EA+HN+LF + FN FGG  I  P  +  I      L  +L  E++
Sbjct:   86 VEKKDLFTGTYMPSTKLTGGYRVLSYLDPSEPRHAQLKNLLFFMLKNSSNRVIPQFETTYTELFEGLEAELAKNGKAAFNDVGEQAAFRFLGRAYFNSNPE-ETKLGTSAPTLISSWVLFNLAPTLDLGLPWFLQEPLLHTFRLPAFLIKSTYNKLYDYFQSVATPVMEQA-EKLGVPKDEAVHNILFAVCFNTFGGVKILFPNTLKWIGLAGENLHTQLAEEIR 308          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.126e-33
Identity = 77/226 (34.07%), Postives = 119/226 (52.65%), Query Frame = 2
Query:    5 IVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            +V+K ++  G FMPS   TGG RV +YLD SEP HA LK      L    +  + +       LF  +E +L+      + V      F FL + ++G DP A + +  +G  ++ KW+  Q+ P +S+ +   +E+  LHS   P ALV  DY++L +F     K VV  G +  G+ +EEA+HN+LF L FN+FGG  I  P L+  +      +  +L +EV+
Sbjct:  124 LVDKTDLFTGTFMPSTDLTGGYRVLSYLDPSEPNHAPLKTLLFYLLSHRRQQVIPKFREVYGDLFGLMENDLARVGKADFGVHNDAAAFGFLCQGLLGRDP-AKSALGRDGPKLITKWVLFQLSPLLSLGLPTLVEDTLLHSLRLPPALVKKDYDRLADFFRDAAKAVVDEG-ERLGIAREEAVHNILFALCFNSFGGMKILFPTLVKWLGRAGARVHGRLATEVR 347          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.932e-32
Identity = 73/226 (32.30%), Postives = 117/226 (51.77%), Query Frame = 2
Query:    8 VEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCV-FNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQPLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEFGLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            VEK+++  G FMPS   TGG RV AYLD SEP HA++K   +  L      +V    S+   L DTVE +L+     S    L     F F+ ++  G  P A + +   G +    WL  Q+ P  ++ +   +E+  LH+   P  L+S DY  L+ +      + +   +   GL++EEA HNLLF   FN++GGF + +P++++ +A     L  +L +E++
Sbjct:   86 VEKRDVFTGTFMPSTSLTGGYRVCAYLDPSEPNHAKIKQLLLSLLVSRKDAFVPVFRSNFGALLDTVESQLASGGGKSDFTALNDATSFEFIGEAYFGVRPSASSSLGTGGPTKAALWLLWQLAPLTTLGLPMIIEDPLLHTLPLPPFLISSDYKALYAYFAAAASQALDAAEG-LGLSREEACHNLLFATVFNSYGGFKLLLPQILSRVAQAGEKLHERLAAEIR 310          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.169e-23
Identity = 66/228 (28.95%), Postives = 115/228 (50.44%), Query Frame = 2
Query:    5 IVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEF-GLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            +V+K + L G FMPS+   GG R  A+LD ++P+HA++K   M               ++   +FD V+  L     + +     + + +F   ++ G  P + A + +   +   KWL  Q+ P  S  +   PLE++ LH+F  P  LV  +Y ++  +       ++   +    G+ ++E +HNL+F+  FNA+GGF IF+P ++  +A     L AKL SEV+
Sbjct:  106 MVDKADTLDGTFMPSLALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDEVDAGLVAGGPVEFNKLNMRYMLDFTCAALFGGAPPSKA-MGDAAVTKAVKWLIFQLHPLASKVVKPWPLEDLLLHTFRLPPFLVRREYGEITAYFAAAAAAILDDAEKNHPGIPRDELLHNLVFVAVFNAYGGFKIFLPHIVKWLARAGPELHAKLASEVR 332          
BLAST of CX289721 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.416e-22
Identity = 67/228 (29.39%), Postives = 113/228 (49.56%), Query Frame = 2
Query:    5 IVEKKNILVGDFMPSVKFTGGLRVSAYLDTSEPKHAQLKGFAMDTLKRSSKLWVSEVVSSLDTLFDTVEKELSEKNSISYMVPLQKCVFNFLSKSIVGADPKADAEIAENGFSMLDKWLALQILPTVSINILQ-PLEEIFLHSFAYPFALVSGDYNKLHNFVEKEGKEVVQRGQDEF-GLTKEEAIHNLLFILGFNAFGGFSIFVPKLINGIASDTTGLQAKLRSEVK 682
            +V+K + L G +MPS    GG R  A+LD ++P+HA++K   M               ++   +FD VE  L    ++ +     + + +F   ++ G +P +   + +   +    WLA Q+ P  S  +   PLEE+ LH+F+ P  LV   Y  L  +       V+   +    G+ ++E + NL+F+  FNAFGGF IF+P ++  +A     L AKL +EV+
Sbjct:  106 MVDKADTLDGTYMPSRALFGGHRPLAFLDAADPRHAKIKRVVMSLAAARMHHVAPAFRAAFAAMFDAVEAGLGA--AVEFNKLNMRYMLDFTCAALFGGEPPSKV-VGDGAVTKAMAWLAFQLHPIASKVVKPWPLEELLLHTFSLPPFLVRRGYADLKAYFADAAAAVLDDAEKSHTGIPRDELLDNLVFVAIFNAFGGFKIFLPHIVKWLARAGPELHAKLATEVR 330          
The following BLAST results are available for this feature:
BLAST of CX289721 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74A_ARATH2.683e-3636.28Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
CP74_LINUS3.504e-3634.22Allene oxide synthase, chloroplastic OS=Linum usit... [more]
C74A2_PARAR5.595e-3432.00Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A1_ORYSJ2.126e-3334.07Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A2_ORYSJ8.932e-3232.30Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ1.169e-2328.95Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ6.416e-2229.39Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02016D10SK IF1 Citrus clementina cDNA clone C02016D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289721 ID=CX289721; Name=CX289721; organism=Citrus clementina; type=EST; length=715bp
GGAGATTGTGGAGAAGAAAAATATTCTTGTTGGTGATTTCATGCCCAGTG
TTAAGTTTACAGGAGGCTTGAGGGTTAGTGCTTATCTTGATACTTCTGAG
CCTAAACATGCCCAGCTCAAAGGCTTCGCCATGGACACTCTGAAAAGAAG
CTCAAAATTATGGGTATCAGAAGTGGTATCAAGTCTGGACACACTGTTCG
ACACCGTCGAGAAAGAGCTCTCCGAAAAGAACAGCATAAGCTACATGGTC
CCTTTACAAAAATGCGTCTTTAACTTCCTCTCAAAATCGATCGTGGGAGC
CGACCCAAAAGCCGACGCCGAAATCGCCGAGAACGGCTTCTCCATGCTCG
ACAAGTGGCTGGCCTTGCAGATCCTGCCCACAGTCAGCATAAACATCTTG
CAGCCCCTTGAAGAGATCTTTCTTCACTCTTTTGCTTACCCTTTTGCCCT
TGTCAGTGGAGACTACAACAAGCTCCACAACTTCGTTGAAAAGGAAGGCA
AAGAAGTTGTGCAGCGGGGGCAGGACGAGTTTGGGCTAACAAAAGAAGAG
GCCATTCACAACTTGCTGTTCATTCTAGGGTTTAATGCTTTCGGTGGGTT
CTCTATTTTTGTGCCAAAGCTGATTAATGGCATTGCTAGTGACACAACTG
GGTTGCAGGCAAAGTTAAGAAGTGAAGTGAAAAGAGAATGTGGGACATCC
GCCTTGACTTTTGAG
back to top