CX289722

Overview
NameCX289722
Unique NameCX289722
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX289722 vs. ExPASy Swiss-Prot
Match: YRDC_HUMAN (YrdC domain-containing protein, mitochondrial OS=Homo sapiens GN=YRDC PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 33/76 (43.42%), Postives = 52/76 (68.42%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRA 653
            S  L K LNP    +G+R+PD  F++ +A+  E  LALTSANL+ Q SS++V++F++LW + + V DGG +  G++
Sbjct:  156 SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFEGPLALTSANLSSQASSLNVEEFQDLWPQLSLVIDGGQIGDGQS 231
[Close]
BLAST of CX289722 vs. ExPASy Swiss-Prot
Match: YRDC_BOVIN (YrdC domain-containing protein, mitochondrial OS=Bos taurus GN=YRDC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 31/76 (40.79%), Postives = 50/76 (65.79%), Query Frame = 3 
Query:  426 SSNLEKSLNPGLESIGVRVPDSNFVRVIARGLESALALTSANLTGQPSSVSVKDFENLWERCACVYDGGVLPSGRA 653
            S  L K LNP    +G+R+PD  F++ +A+     LALTSANL+ Q SS++V++F++LW   + + DGG +  G++
Sbjct:  154 SEELNKDLNPFTPLVGIRIPDHAFMQDLAQMFGGPLALTSANLSSQSSSLNVEEFQDLWPHLSLIIDGGPIGDGQS 229
The following BLAST results are available for this feature:
BLAST of CX289722 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YRDC_HUMAN5.508e-1243.42YrdC domain-containing protein, mitochondrial OS=H... [more]
YRDC_BOVIN6.090e-1140.79YrdC domain-containing protein, mitochondrial OS=B... [more]
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Properties
Property NameValue
Genbank descriptionC02016D11SK IF1 Citrus clementina cDNA clone C02016D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX289722 ID=CX289722; Name=CX289722; organism=Citrus clementina; type=EST; length=680bp
GTTAAATTGAATTTTAATACTCCATGTTAGACATGGGCAGATCGCTCATT
GGATCACCCATGATAGGCTGACTTGACACAAGATGTGATGGTAGTTATCC
CACTTACAACGTGTCAAAGAGTTTTTGGGGAAGTGCCGGGAGAAGTTGGT
GAGAAGTAGTTCTTTGGAAGCCTAACTTCTCTCCATCTTGCTATCATCTC
TAATAATTCACATAAAATTGAACAAGCGGAGAATACAACATTGTAGAAAG
CGCAAAAGCAGATGCAATTGGCAAAGAACAAATACAAAGAGTTTTTAAGA
ACTTCAAAAGGATTTAGTCTGGCCATGTAGCAATTGTTTGGGTTCTTCTG
CTGTGAATCGAGGAAGCTTTAGAATTACGTGATAGCTTCCCAACCAATTA
TGAATACGGATTCAACCTTGGCGAGTCAAGTAACCTTGAGAAGTCCTTGA
ATCCTGGATTGGAAAGTATAGGTGTCCGAGTGCCCGATTCCAACTTTGTC
AGGGTTATTGCCCGCGGTTTGGAAAGTGCATTGGCTCTCACAAGTGCAAA
TCTAACTGGACAGCCAAGTAGTGTTAGCGTCAAAGATTTTGAGAACTTAT
GGGAACGCTGTGCGTGCGTTTATGATGGTGGAGTGCTTCCATCAGGTCGT
GCGGGATCACAGTTGTGGATCTCACCAGGC
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