CX290650

Overview
NameCX290650
Unique NameCX290650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length638
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3_YEAST (Eukaryotic peptide chain release factor GTP-binding subunit OS=Saccharomyces cerevisiae GN=SUP35 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.622e-15
Identity = 43/80 (53.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  396 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFD 635
            I +APGHK YV  MI GASQA++G  VI A              TREH +LAKT G NK+++VVNK D P +NWSKER+D
Sbjct:  342 ILDAPGHKMYVSEMIGGASQADVGVLVISARKGEYETGFERGGQTREHALLAKTQGVNKMVVVVNKMDDPTVNWSKERYD 421          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3_ZYGRO (Eukaryotic peptide chain release factor GTP-binding subunit OS=Zygosaccharomyces rouxii GN=SUP35 PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.068e-15
Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:  396 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFD 635
            I +APGHK YV  MI GASQA++G  VI A              TREH +LAKT G NKL++ +NK D P +NWSKER+D
Sbjct:  319 ILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKLIVTINKMDDPTVNWSKERYD 398          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3A_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Mus musculus GN=Gspt1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  372 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFDGFKKASPP 635
            I +APGHKS+VPNMI GASQA++   VI A              TREH MLAKT G   L++++NK D P +NWS ER++  K+   P
Sbjct:  156 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 243          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3A_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3A OS=Homo sapiens GN=GSPT1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.054e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  372 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFDGFKKASPP 635
            I +APGHKS+VPNMI GASQA++   VI A              TREH MLAKT G   L++++NK D P +NWS ER++  K+   P
Sbjct:  156 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLVP 243          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3_CANMA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Candida maltosa GN=SUP35 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.797e-14
Identity = 42/79 (53.16%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  399 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERF 635
            I +APGHK YV  MI GASQA++G  VI A              TREH +LAKT G NK+++VVNK D P +NWSKER+
Sbjct:  371 ILDAPGHKMYVSEMIGGASQADVGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKIIVVVNKMDDPTVNWSKERY 449          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3B_PONAB (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Pongo abelii GN=GSPT2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  372 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFDGFKKASPP 635
            I +APGHKS+VPNMI GASQA++   VI A              TREH MLAKT G   L++++NK D P +NWS ER++  K+   P
Sbjct:  285 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVP 372          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3B_HUMAN (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Homo sapiens GN=GSPT2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.347e-14
Identity = 42/88 (47.73%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  372 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFDGFKKASPP 635
            I +APGHKS+VPNMI GASQA++   VI A              TREH MLAKT G   L++++NK D P +NWS ER++  K+   P
Sbjct:  285 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSIERYEECKEKLVP 372          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3_PICPI (Eukaryotic peptide chain release factor GTP-binding subunit OS=Pichia pinus GN=SUP2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.004e-14
Identity = 39/80 (48.75%), Postives = 52/80 (65.00%), Query Frame = -1
Query:  396 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFD 635
            I +APGHK Y+  MI GASQA++G  VI +              +REH +LAKT G NKL++V+NK D P +NWSKER++
Sbjct:  400 ILDAPGHKLYISEMIGGASQADVGVLVISSRKGEYEAGFERGGQSREHAILAKTQGVNKLVVVINKMDDPTVNWSKERYE 479          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3B_MOUSE (Eukaryotic peptide chain release factor GTP-binding subunit ERF3B OS=Mus musculus GN=Gspt2 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.230e-14
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = -1
Query:  372 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFDGFKKASPP 635
            I +APGHKS+VPNMI GASQA++   VI A              TREH MLAKT G   L++++NK D P ++WS ER++  K+   P
Sbjct:  289 ILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKYLIVLINKMDDPTVDWSSERYEECKEKLVP 376          
BLAST of CX290650 vs. ExPASy Swiss-Prot
Match: ERF3_KLULA (Eukaryotic peptide chain release factor GTP-binding subunit OS=Kluyveromyces lactis GN=SUP35 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 40/80 (50.00%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  396 IWEAPGHKSYVPNMIRGASQAEMGGRVIFAXXXXXXXXXXXXXXTREHVMLAKTLGGNKLLLVVNKRDAPPLNWSKERFD 635
            I +APGHK YV  MI GASQA++G  VI A              TREH +LAKT G NK+++V+NK D P + W KER+D
Sbjct:  356 ILDAPGHKMYVSEMIGGASQADIGILVISARKGEYETGFEKGGQTREHALLAKTQGVNKMIVVINKMDDPTVGWDKERYD 435          
The following BLAST results are available for this feature:
BLAST of CX290650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
ERF3_YEAST3.622e-1553.75Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_ZYGRO8.068e-1552.50Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_MOUSE1.054e-1447.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3A_HUMAN1.054e-1447.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_CANMA1.797e-1453.16Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_PONAB2.347e-1447.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_HUMAN2.347e-1447.73Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_PICPI4.004e-1448.75Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3B_MOUSE5.230e-1446.59Eukaryotic peptide chain release factor GTP-bindin... [more]
ERF3_KLULA6.830e-1450.00Eukaryotic peptide chain release factor GTP-bindin... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01018H10SK Veg1 Citrus clementina cDNA clone C01018H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290650 ID=CX290650; Name=CX290650; organism=Citrus clementina; type=EST; length=638bp
CTNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAAAA
CAAAAATTTTTGAGTTTCATTCAAAGAGACCAATCTTGGGGGAAGAAAAC
CCCAAAAATTTTACCCATATTAAGCGAACTTTGAACAGACTGGCTGGCAA
AAAAATCAATTTTAACTTTTTGTAACCCGTAAAAATGGGAAGGGGGGAAC
AAATTAGGGCCTACTTTACCCCCCTCAAACAACAAAACCCTCAATAACCC
CGGGCCCTACATAAGCCCCCTTAAAAGCTGGGGGTTTCTCCCAAAGGCCG
AATCAATGAATTTCAAAAAGTTGGGGGGGAAGCTTTTTTAAACCCATCAA
ACCTTTCCTTTGACCAGTTCAAAGGGGGGGCATCCCTTTTATTTACCACA
AGAAGCAGTTTATTCCCCCCCAAGGTTTTTGCAAGCATGACATGTTCACG
GGTCTGCCCCCCTTTTTCAAACCCAGTTTCAAACCCTCCTTTTTGAGCAA
AAATTACCCGTCCCCCCATTTCAGCTTGGGAGGCCCCCCTAATCATATTA
GGGACATAACTCTTGTGACCCGGCGCCTCCCAAATTGG
back to top