CX290839

Overview
NameCX290839
Unique NameCX290839
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig378 contig Ccv1_Contig378:168..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1_ORYSJ (2-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BAS1 PE=1 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 2.584e-98
Identity = 184/220 (83.64%), Postives = 194/220 (88.18%), Query Frame = 1
Query:   67 PRSFSGLRNPLQSQVPRPVSLSRGSRSRKSFVVKAS-VEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            P S S  R P    +    S SR +R+  SFV +A  V+  PLVGN APDF AEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTEILGVS DSVFSHLAWVQTDRKSGGLGDLKYPLI+D+TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDET+RTLQALQYVQ+NPDEVCPAGWKPGDKS
Sbjct:   28 PHSLSLPRAPAARPLRLSASSSRSARA-SSFVARAGGVDDAPLVGNKAPDFDAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYDEFEKLNTEILGVSIDSVFSHLAWVQTDRKSGGLGDLKYPLISDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPGDKS 246          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1B_ARATH (2-Cys peroxiredoxin BAS1-like, chloroplastic OS=Arabidopsis thaliana GN=At5g06290 PE=2 SV=2)

HSP 1 Score: 352.443 bits (903), Expect = 1.418e-96
Identity = 172/195 (88.21%), Postives = 182/195 (93.33%), Query Frame = 1
Query:  139 SRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            S SR++F VKA  +  PLVGN APDF AEAVFDQEFI VKLS+YIGKKYVILFFYPLDFTFVCPTEITAFSDRY EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPL++DITKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQYVQENPDEVCPAGWKPG+KS
Sbjct:   62 SASRRNFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSEYIGKKYVILFFYPLDFTFVCPTEITAFSDRYEEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLVSDITKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYVQENPDEVCPAGWKPGEKS 256          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1A_ARATH (2-Cys peroxiredoxin BAS1, chloroplastic OS=Arabidopsis thaliana GN=BAS1 PE=1 SV=2)

HSP 1 Score: 352.058 bits (902), Expect = 1.852e-96
Identity = 177/209 (84.69%), Postives = 189/209 (90.43%), Query Frame = 1
Query:   97 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+GVLI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY+QENPDEVCPAGWKPG+KS
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYIQENPDEVCPAGWKPGEKS 251          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1_SPIOL (2-Cys peroxiredoxin BAS1, chloroplastic OS=Spinacia oleracea GN=BAS1 PE=2 SV=1)

HSP 1 Score: 341.658 bits (875), Expect = 2.503e-93
Identity = 175/209 (83.73%), Postives = 186/209 (89.00%), Query Frame = 1
Query:   97 LQSQVPRPVSLSRGSRSRKSFVVKASVEIPPLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            L+S   R  SLS  S SR+SF VKA  +  PLVGN APDF AEAVFDQEFI VKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR++EFEKLNTE+LGVS DSVFSHLAWVQTDRKSGGLGDL YPLI+D+TKSISKS+GVLI DQGIALRGLFIIDKEGVIQHSTINNL IGRSVDET+RTLQALQY   NPDEVCPAGWKPG+KS
Sbjct:   45 LRSGFARRSSLS--STSRRSFAVKAQADDLPLVGNKAPDFEAEAVFDQEFIKVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHSEFEKLNTEVLGVSVDSVFSHLAWVQTDRKSGGLGDLNYPLISDVTKSISKSFGVLIHDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETMRTLQALQYT-GNPDEVCPAGWKPGEKS 250          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1_HORVU (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Hordeum vulgare GN=BAS1 PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 5.577e-93
Identity = 169/192 (88.02%), Postives = 182/192 (94.79%), Query Frame = 1
Query:  151 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTLQALQYV++ PDEVCPAGWKPG+KS
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLQALQYVKK-PDEVCPAGWKPGEKS 195          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: BAS1_WHEAT (2-Cys peroxiredoxin BAS1, chloroplastic (Fragment) OS=Triticum aestivum GN=TSA PE=1 SV=2)

HSP 1 Score: 338.961 bits (868), Expect = 1.623e-92
Identity = 168/192 (87.50%), Postives = 182/192 (94.79%), Query Frame = 1
Query:  151 KSFVVKASVEIP-PLVGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            +SFV +A+ E   PLVGN APDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDR+ EFEK+NTEILGVS DSVFSHLAWVQT+RKSGGLGDLKYPL++D+TKSISKS+GVLIPDQGIALRGLFIIDKEGVIQHSTINNL IGRSVDETLRTL+ALQYV++ PDEVCPAGWKPG+KS
Sbjct:    5 RSFVARAAAEYDLPLVGNKAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRHEEFEKINTEILGVSVDSVFSHLAWVQTERKSGGLGDLKYPLVSDVTKSISKSFGVLIPDQGIALRGLFIIDKEGVIQHSTINNLGIGRSVDETLRTLRALQYVKK-PDEVCPAGWKPGEKS 195          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: YCF42_PORYE (Putative peroxiredoxin ycf42 OS=Porphyra yezoensis GN=ycf42 PE=3 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.663e-70
Identity = 126/177 (71.19%), Postives = 150/177 (84.75%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            VG  APDF+A AV+DQEF  +KLSD +  KY++LFFYPLDFTFVCPTEITAFSD+Y  F +LNTE+LGVS DS +SHLAW+QTDR+SGGLGDL YPL++D+ K IS +Y VL  D G+ALRGLFIID +G+IQ+STINNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGDK+
Sbjct:   10 VGQLAPDFSATAVYDQEFKTLKLSD-LKNKYIVLFFYPLDFTFVCPTEITAFSDKYNAFSELNTEVLGVSVDSEYSHLAWLQTDRESGGLGDLSYPLVSDLKKEISAAYNVLNSD-GVALRGLFIIDPKGIIQYSTINNLEFGRSVEETLRVLQAIQYVQSHPDEVCPANWKPGDKT 184          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: YCF42_PORPU (Putative peroxiredoxin ycf42 OS=Porphyra purpurea GN=ycf42 PE=3 SV=1)

HSP 1 Score: 262.692 bits (670), Expect = 1.478e-69
Identity = 126/177 (71.19%), Postives = 152/177 (85.88%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            VG  APDF+A AV+DQEF  +KLSD+   KYVILFFYPLDFTFVCPTEITAFSD+Y++F +LNTEILGVS DS +SHLAW+QTDR+SGGLGDL+YPL++D+ K IS +Y VL    G+ALRGLFIID +G+IQ+ST+NNL  GRSV+ETLR LQA+QYVQ +PDEVCPA WKPGD++
Sbjct:   10 VGQIAPDFSATAVYDQEFKTIKLSDF-KNKYVILFFYPLDFTFVCPTEITAFSDKYSDFSELNTEILGVSVDSEYSHLAWLQTDRESGGLGDLEYPLVSDLKKEISIAYNVL-NSGGVALRGLFIIDPKGIIQYSTVNNLEFGRSVEETLRVLQAIQYVQAHPDEVCPANWKPGDRT 184          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: Y755_SYNY3 (Putative peroxiredoxin sll0755 OS=Synechocystis sp. (strain PCC 6803) GN=sll0755 PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 9.912e-66
Identity = 114/177 (64.41%), Postives = 148/177 (83.62%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGDKS 723
            VG  APDF A A+ DQ F  VKLS Y GK Y++LFFYPLDFTFVCPTEI AFSDR++EF  L+TE++G+S DS FSHLAW+QT+RK GG+G++ YPL++D+ K IS++Y VL PD GIALRGLFIID+EG++Q++T+NNL+ GRSVDETLR L+A+++VQ +P+EVCP  W+ GDK+
Sbjct:    7 VGQPAPDFTATAIVDQSFQTVKLSTYRGK-YLVLFFYPLDFTFVCPTEIIAFSDRHSEFTALDTEVVGISVDSEFSHLAWIQTERKMGGIGNINYPLVSDLKKEISQAYNVLEPDAGIALRGLFIIDREGILQYATVNNLSFGRSVDETLRVLKAIRHVQSHPNEVCPVDWQEGDKT 182          
BLAST of CX290839 vs. ExPASy Swiss-Prot
Match: PRDX2_MOUSE (Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3)

HSP 1 Score: 231.491 bits (589), Expect = 3.648e-60
Identity = 113/174 (64.94%), Postives = 135/174 (77.59%), Query Frame = 1
Query:  193 VGNTAPDFAAEAVFDQEFINVKLSDYIGKKYVILFFYPLDFTFVCPTEITAFSDRYTEFEKLNTEILGVSTDSVFSHLAWVQTDRKSGGLGDLKYPLIADITKSISKSYGVLIPDQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPG 714
            +G +APDF A AV D  F  +KLSDY GK YV+LFFYPLDFTFVCPTEI AFSD   +F KL  E+LGVS DS F+HLAW+ T RK GGLG L  PL+AD+TKS+S++YGVL  D+GIA RGLFIID +GV++  T+N+L +GRSVDE LR +QA QY  E+  EVCPAGWKPG
Sbjct:    8 IGKSAPDFTATAVVDGAFKEIKLSDYRGK-YVVLFFYPLDFTFVCPTEIIAFSDHAEDFRKLGCEVLGVSVDSQFTHLAWINTPRKEGGLGPLNIPLLADVTKSLSQNYGVLKNDEGIAYRGLFIIDAKGVLRQITVNDLPVGRSVDEALRLVQAFQYTDEH-GEVCPAGWKPG 179          
The following BLAST results are available for this feature:
BLAST of CX290839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 147
Match NameE-valueIdentityDescription
BAS1_ORYSJ2.584e-9883.642-Cys peroxiredoxin BAS1, chloroplastic OS=Oryza s... [more]
BAS1B_ARATH1.418e-9688.212-Cys peroxiredoxin BAS1-like, chloroplastic OS=Ar... [more]
BAS1A_ARATH1.852e-9684.692-Cys peroxiredoxin BAS1, chloroplastic OS=Arabido... [more]
BAS1_SPIOL2.503e-9383.732-Cys peroxiredoxin BAS1, chloroplastic OS=Spinaci... [more]
BAS1_HORVU5.577e-9388.022-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
BAS1_WHEAT1.623e-9287.502-Cys peroxiredoxin BAS1, chloroplastic (Fragment)... [more]
YCF42_PORYE8.663e-7071.19Putative peroxiredoxin ycf42 OS=Porphyra yezoensis... [more]
YCF42_PORPU1.478e-6971.19Putative peroxiredoxin ycf42 OS=Porphyra purpurea ... [more]
Y755_SYNY39.912e-6664.41Putative peroxiredoxin sll0755 OS=Synechocystis sp... [more]
PRDX2_MOUSE3.648e-6064.94Peroxiredoxin-2 OS=Mus musculus GN=Prdx2 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC02027G03SK IF1 Citrus clementina cDNA clone C02027G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290839 ID=CX290839; Name=CX290839; organism=Citrus clementina; type=EST; length=733bp
GAGGATTTCCTCTAACCCAAGGCTTTCTCTTCTTCCTCAATCTCCCCTTC
TCAAAACCTAACCATTCCCCGCTCCTTCTCCGGCCTCCGCAATCCCCTCC
AGTCCCAGGTCCCCCGCCCCGTTTCTCTTTCCCGCGGGTCCCGTTCTCGC
AAGTCCTTCGTTGTCAAAGCATCCGTTGAAATACCACCATTGGTGGGCAA
CACGGCACCTGATTTTGCTGCAGAGGCTGTTTTCGATCAAGAGTTCATCA
ATGTCAAGCTTTCGGATTACATTGGGAAGAAATATGTGATTCTCTTTTTC
TACCCGTTGGACTTCACATTTGTTTGCCCCACAGAAATCACTGCTTTCAG
CGACCGATATACTGAATTTGAGAAGCTAAACACAGAGATATTGGGTGTCT
CAACCGACAGTGTGTTTTCACACTTGGCATGGGTCCAAACAGACAGAAAG
TCAGGTGGTCTTGGTGATTTGAAGTACCCACTAATTGCTGATATCACCAA
ATCAATTTCAAAATCCTATGGTGTTCTGATCCCTGATCAGGGAATTGCAT
TGAGAGGACTCTTTATTATTGACAAAGAAGGAGTCATCCAGCACTCAACC
ATTAACAACCTTGCCATTGGTAGGAGTGTTGACGAGACACTGAGAACACT
TCAGGCCTTGCAGTACGTGCAGGAGAACCCAGATGAAGTTTGCCCAGCAG
GATGGAAGCCCGGGGACAAATCATGAAGCCAGA
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