CX290844
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2) HSP 1 Score: 192.2 bits (487), Expect = 2.217e-48 Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 1 Query: 1 SAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV----KSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPN--SKPGIENAG--EMKSGDMFFIDPFIDLNDFDYPNSFQNH-HSAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDIDFCRSKL----XXXXXXXXXXXXXXLDVGVVPDGNSMSDIS 681 SAFLC+ CD RIH+ +H RVW+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V SS F L S + ++ G+ WL+PN ++P G MK F F L DF++PNSF +H ++AG DS+VPVQT T+P L NN++CFDIDFCRSKL ++ GVVPDGN+ + ++ Sbjct: 38 SAFLCIACDTRIHS-FTRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTTVDLTAVPVMADDLGL--CPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVN 265
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43 Identity = 111/267 (41.57%), Postives = 147/267 (55.06%), Query Frame = 1 Query: 1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD--SADSIVKSSAFNFLVP---SDQNGGSEFTGASEHDGVDSASW-LIPNSK------------------PGIENAGEMKSGDMFFI---DPFIDLN--DFDYPNSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL-----XXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTF 690 +AFLCL+CD ++H ++HARVWMCEVCEQAPA VTCKADAAALCVTCD DIHSANPLARRHER+P+ PF+D S+D VK +A NFL SD +G G+ E + ++ASW L+PN K PG ++ EM +G + DP++DL+ + D +S+G D VVPV+ NENCF++DF ++VGVVPDG S++D+SY + Sbjct: 22 AAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDG----NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPG--DSPEMNTGQQYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTV----------NENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPY 272
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1) HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32 Identity = 89/203 (43.84%), Postives = 114/203 (56.16%), Query Frame = 1 Query: 1 SAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYP--NSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL 591 +AFLC +CD +IH ++H RVW+CEVCEQAPA VTCKADAAALCVTCD DIHSANPL+RRHER+PI PF+D+ SS+ NF+ D++GG +ASWL+ +K GIE ++F +D DYP +S+G D VVPVQ L NE+ F+ D SK+ Sbjct: 24 AAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV-----------TASWLL--AKEGIEIT------NLF--------SDLDYPKIEVTSEENSSGNDGVVPVQN--------------KLFLNEDYFNFDLSASKI 182
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26 Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 1 Query: 1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--DYPNSFQNH------HSAGMDSVVPVQ 492 SA+LC CD R+H ++H RV +C+ CE APAA CKADAA+LC CD +IHSANPLARRH+R+PI P + +++ + + PS+ + ++ D + ASWL+PN PG +N G +G +F ++ ++DL D+ N F+++ S G D VVP+Q Sbjct: 32 SAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILP--------LSANSCSSMAPSETDAD------NDEDDREVASWLLPN--PG-KNIGNQNNGFLFGVE-YLDLVDYSSSMDNQFEDNQYTHYQRSFGGDGVVPLQ 188
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26 Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 1 Query: 1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--------DYPNSFQ-----NHHSAGMDSVVPVQ 492 SA+LC +CD ++H ++H RV +C+ CE+APAA CKADAA+LC TCD++IHSANPLARRH+R+PI P + S S + + V +N + D ++ASWL+PNS N G D F++L D+ D N +Q S G D VVP+Q Sbjct: 28 SAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG-----DEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ 203
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24 Identity = 68/190 (35.79%), Postives = 100/190 (52.63%), Query Frame = 1 Query: 1 SAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFLVPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFD------YPNSFQNHH--------SAGMDSVVPVQ 492 SA+LC++CD ++H+ ++H RV +CE CE+APAA C+AD A+LC CD+++HSANPLARRH+R+PI P F S + S P DQ G E + D + ASWL PNS N ++ + F D +++L D++ + + H S G D VVP++ Sbjct: 36 SAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEE----GDKDAKEVASWLFPNSDKNNNN----QNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLK 217 The following BLAST results are available for this feature:
BLAST of CX290844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX290844 ID=CX290844; Name=CX290844; organism=Citrus clementina; type=EST; length=691bpback to top |