CX290844

Overview
NameCX290844
Unique NameCX290844
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12842 contig Ccv1_Contig12842:207..897. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL5_ARATH (Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis thaliana GN=COL5 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 2.217e-48
Identity = 115/241 (47.72%), Postives = 146/241 (60.58%), Query Frame = 1
Query:    1 SAFLCLNCDLRIHNCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIV----KSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPN--SKPGIENAG--EMKSGDMFFIDPFIDLNDFDYPNSFQNH-HSAGMDSVVPVQT-TKPEXXXXXXXXXXXLINNENCFDIDFCRSKL----XXXXXXXXXXXXXXLDVGVVPDGNSMSDIS 681
            SAFLC+ CD RIH+   +H RVW+CEVCEQAPAAVTCKADAAALCV+CD DIHSANPLA RHER+P+E FFDSA++ V     SS F  L  S     +     ++  G+    WL+PN  ++P     G   MK    F    F  L DF++PNSF +H ++AG DS+VPVQT T+P            L NN++CFDIDFCRSKL                  ++ GVVPDGN+ + ++
Sbjct:   38 SAFLCIACDTRIHS-FTRHERVWVCEVCEQAPAAVTCKADAAALCVSCDADIHSANPLASRHERVPVETFFDSAETAVAKISASSTFGILGSSTTVDLTAVPVMADDLGL--CPWLLPNDFNEPAKIEIGTENMKGSSDFMFSDFDRLIDFEFPNSFNHHQNNAGGDSLVPVQTKTEP----------LPLTNNDHCFDIDFCRSKLSAFTYPSQSVSHSVSTSSIEYGVVPDGNTNNSVN 265          
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 111/267 (41.57%), Postives = 147/267 (55.06%), Query Frame = 1
Query:    1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD--SADSIVKSSAFNFLVP---SDQNGGSEFTGASEHDGVDSASW-LIPNSK------------------PGIENAGEMKSGDMFFI---DPFIDLN--DFDYPNSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL-----XXXXXXXXXXXXXXLDVGVVPDGNSMSDISYTF 690
            +AFLCL+CD ++H      ++HARVWMCEVCEQAPA VTCKADAAALCVTCD DIHSANPLARRHER+P+ PF+D  S+D  VK +A NFL     SD +G     G+ E +  ++ASW L+PN K                  PG  ++ EM +G  +     DP++DL+  + D        +S+G D VVPV+                   NENCF++DF                        ++VGVVPDG S++D+SY +
Sbjct:   22 AAFLCLSCDSKVHAANKLASRHARVWMCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGSVKHTAVNFLDDCYFSDIDG----NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPG--DSPEMNTGQQYLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRIPTV----------NENCFEMDFTGGSKGFTYGGGYNCISHSVSSSSMEVGVVPDGGSVADVSYPY 272          
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.909e-32
Identity = 89/203 (43.84%), Postives = 114/203 (56.16%), Query Frame = 1
Query:    1 SAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVK-SSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFDYP--NSFQNHHSAGMDSVVPVQTTKPEXXXXXXXXXXXLINNENCFDIDFCRSKL 591
            +AFLC +CD +IH      ++H RVW+CEVCEQAPA VTCKADAAALCVTCD DIHSANPL+RRHER+PI PF+D+       SS+ NF+   D++GG             +ASWL+  +K GIE        ++F        +D DYP        +S+G D VVPVQ                L  NE+ F+ D   SK+
Sbjct:   24 AAFLCGDCDGKIHTANKLASRHERVWLCEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVNFV---DEDGGDV-----------TASWLL--AKEGIEIT------NLF--------SDLDYPKIEVTSEENSSGNDGVVPVQN--------------KLFLNEDYFNFDLSASKI 182          
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.826e-26
Identity = 70/175 (40.00%), Postives = 104/175 (59.43%), Query Frame = 1
Query:    1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFDSADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--DYPNSFQNH------HSAGMDSVVPVQ 492
            SA+LC  CD R+H      ++H RV +C+ CE APAA  CKADAA+LC  CD +IHSANPLARRH+R+PI P        + +++ + + PS+ +        ++ D  + ASWL+PN  PG +N G   +G +F ++ ++DL D+     N F+++       S G D VVP+Q
Sbjct:   32 SAYLCTTCDARVHAANRVASRHERVRVCQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQRVPILP--------LSANSCSSMAPSETDAD------NDEDDREVASWLLPN--PG-KNIGNQNNGFLFGVE-YLDLVDYSSSMDNQFEDNQYTHYQRSFGGDGVVPLQ 188          
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.939e-26
Identity = 71/181 (39.23%), Postives = 98/181 (54.14%), Query Frame = 1
Query:    1 SAFLCLNCDLRIH---NCMNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPFFD-SADSIVKSSAFNFLVPSDQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDF--------DYPNSFQ-----NHHSAGMDSVVPVQ 492
            SA+LC +CD ++H      ++H RV +C+ CE+APAA  CKADAA+LC TCD++IHSANPLARRH+R+PI P  + S  S   + +    V   +N         + D  ++ASWL+PNS     N      G     D F++L D+        D  N +Q        S G D VVP+Q
Sbjct:   28 SAYLCSSCDAQVHAANRLASRHERVRVCQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPENRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIG-----DEFLNLVDYSSSDKQFTDQSNQYQLDCNVPQRSYGEDGVVPLQ 203          
BLAST of CX290844 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.232e-24
Identity = 68/190 (35.79%), Postives = 100/190 (52.63%), Query Frame = 1
Query:    1 SAFLCLNCDLRIHNC---MNKHARVWMCEVCEQAPAAVTCKADAAALCVTCDNDIHSANPLARRHERLPIEPF----FDSADSIVKSSAFNFLVPS-----DQNGGSEFTGASEHDGVDSASWLIPNSKPGIENAGEMKSGDMFFIDPFIDLNDFD------YPNSFQNHH--------SAGMDSVVPVQ 492
            SA+LC++CD ++H+     ++H RV +CE CE+APAA  C+AD A+LC  CD+++HSANPLARRH+R+PI P     F S  +    S      P      DQ  G E     + D  + ASWL PNS     N    ++  + F D +++L D++      +   +  H         S G D VVP++
Sbjct:   36 SAYLCMSCDAQVHSANRVASRHKRVRVCESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDPEKRLVVDQEEGEE----GDKDAKEVASWLFPNSDKNNNN----QNNGLLFSDEYLNLVDYNSSMDYKFTGEYSQHQQNCSVPQTSYGGDRVVPLK 217          
The following BLAST results are available for this feature:
BLAST of CX290844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
COL5_ARATH2.217e-4847.72Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... [more]
COL4_ARATH2.804e-4341.57Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
COL3_ARATH2.909e-3243.84Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL2_ARATH1.826e-2640.00Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL1_ARATH6.939e-2639.23Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
CONS_ARATH2.232e-2435.79Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
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Properties
Property NameValue
Genbank descriptionC02027G08SK IF1 Citrus clementina cDNA clone C02027G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290844 ID=CX290844; Name=CX290844; organism=Citrus clementina; type=EST; length=691bp
TCTGCTTTCCTATGCCTGAACTGCGATTTAAGAATCCACAATTGCATGAA
CAAACACGCGCGTGTCTGGATGTGCGAGGTCTGCGAGCAGGCCCCTGCGG
CTGTCACGTGTAAGGCTGATGCGGCTGCCTTGTGTGTCACGTGCGACAAT
GATATCCACTCTGCCAACCCTTTAGCCCGGCGCCATGAACGCCTCCCTAT
TGAGCCGTTCTTCGACTCGGCTGACTCGATTGTCAAGTCGTCGGCTTTTA
ACTTCCTGGTTCCGAGTGATCAAAATGGCGGCTCAGAGTTTACTGGCGCC
AGTGAACACGACGGCGTGGACTCTGCTTCCTGGCTGATTCCGAATTCGAA
ACCTGGAATTGAAAACGCGGGTGAAATGAAATCCGGGGATATGTTTTTCA
TCGATCCGTTTATTGATTTGAATGATTTTGATTATCCGAATTCATTTCAG
AATCATCATAGCGCTGGCATGGACAGTGTTGTGCCTGTTCAAACAACTAA
ACCGGAACCAATTCCAGCTCAAGCTGCAGCTCCAATTCCTTTGATCAACA
ATGAAAATTGCTTCGATATCGATTTCTGTAGATCCAAGCTCTCTTCATTC
AACTACCAAAGCCAAAGTGTTTCATCGTCATCTCTTGATGTTGGAGTAGT
TCCAGATGGGAACTCTATGTCCGATATTTCTTACACATTTG
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