CX290881

Overview
NameCX290881
Unique NameCX290881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length548
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP12_ARATH (Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=2 SV=2)

HSP 1 Score: 296.975 bits (759), Expect = 3.982e-80
Identity = 147/183 (80.33%), Postives = 151/183 (82.51%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTP-FKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRPNRPLTHLEE 546
            QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNN P FKFTKYSNAYMLVYIRESDKDKIICNVDE+DIA                        HLYT+IKVARD+DL EQIGKDIYFDLVDHDKVRSFRIQKQ PF  FKEEVAKEFGVPVQLQRFW+WAKRQNHTYRPNRPLT  EE
Sbjct:  467 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEEKEDKRRYKAQAHLYTIIKVARDEDLKEQIGKDIYFDLVDHDKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLTPQEE 649          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP13_ARATH (Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabidopsis thaliana GN=UBP13 PE=1 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.185e-78
Identity = 141/182 (77.47%), Postives = 149/182 (81.87%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRPNRPLTHLEE 546
            QWYKFDDERVTKED+KRALEEQYGGEEELPQ NPGFNN PFKFTKYSNAYMLVYIRESDKDKIICNVDE+DIA                        HL+T IKVARDDD+ EQIGK+IYFDLVDH+KVRSFRIQKQ PF  FKEEVAKEFGVPVQLQRFW+WAKRQNHTYRPNRPL+  EE
Sbjct:  466 QWYKFDDERVTKEDVKRALEEQYGGEEELPQNNPGFNNPPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEEKEDKRKYKAQAHLFTTIKVARDDDITEQIGKNIYFDLVDHEKVRSFRIQKQTPFQQFKEEVAKEFGVPVQLQRFWIWAKRQNHTYRPNRPLSPNEE 647          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP5_SCHPO (Probable ubiquitin carboxyl-terminal hydrolase 5 OS=Schizosaccharomyces pombe GN=ubp5 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 9.655e-18
Identity = 55/181 (30.39%), Postives = 87/181 (48.07%), Query Frame = 1
Query:    4 WYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDI--YFDLVDHDKVRSFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRPNRPLTHL 540
            WYK+DD RVT+  L+  LEE YGG+  +   +P F + P K  ++ +AYML+Y+R+   D+++  V   +I                         HLYT +++   +   E    DI  + +    + +  FRI+K+  F+ F   VA++ G P +  RFW   KR N T R   P+  L
Sbjct:  477 WYKYDDTRVTRATLREVLEENYGGDYIM---HPPFRS-PVKLKRFMSAYMLLYLRKDKLDELMNPVSADEIPEHLKEALNPSIQLAELRRKERLESHLYTKVQLITPEFYSEHHEFDIADFGNAYKEETIPQFRIKKEAKFSEFIPIVAEKLGYPQECMRFWYVVKRHNCTVRVESPVNEL 653          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP21_SCHPO (Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizosaccharomyces pombe GN=ubp21 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.458e-14
Identity = 54/178 (30.34%), Postives = 79/178 (44.38%), Query Frame = 1
Query:    4 WYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIY-FDLVDHDKVR-SFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRPNRPL 531
            W+KFDD+RVT+  +K  LE+ YGGE        G+N  PFK  ++ NAYMLVY R+S  D I+  V  +D+                          +Y  ++V   D   +  G D+  F   D D V  + +I++       ++ +A          R WL   RQN T R + PL
Sbjct:  494 WFKFDDDRVTRATIKEVLEDNYGGEP--AGRAKGYNGNPFK--RFMNAYMLVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHRVVERKLLEREEQQIYRRVRVLTTDGFKKYHGFDMTDFSASDDDPVLITTKIKRNANIWDLQKHLAGLLNRDTSGIRIWLMTNRQNRTVRVDLPL 667          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP7_RAT (Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus norvegicus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVR--SFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRP 519
            +W KFDD+ V++   + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI                         HLY  +++  +D      G D+Y    D +KVR   F++ K      F + +++  G P    R W    R N T RP
Sbjct:  477 KWCKFDDDVVSRCTKEEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 636          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP7_MOUSE (Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus musculus GN=Usp7 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.641e-12
Identity = 48/175 (27.43%), Postives = 73/175 (41.71%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVR--SFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRP 519
            +W KFDD+ V++   + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI                         HLY  +++  +D      G D+Y    D +KVR   F++ K      F + +++  G P    R W    R N T RP
Sbjct:  477 KWCKFDDDVVSRCTKEEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVRYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 636          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP7_CHICK (Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus gallus GN=USP7 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.062e-12
Identity = 47/175 (26.86%), Postives = 73/175 (41.71%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVR--SFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRP 519
            +W KFDD+ V++   + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI                         HLY  +++  +D      G D+Y    D +KV+   F++ K      F + +++  G P    R W    R N T RP
Sbjct:  476 KWCKFDDDVVSRCTKEEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQPVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSTLTEFVQNLSQTMGFPQDQIRLWPMQARSNGTKRP 635          
BLAST of CX290881 vs. ExPASy Swiss-Prot
Match: UBP7_HUMAN (Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sapiens GN=USP7 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.034e-11
Identity = 47/175 (26.86%), Postives = 73/175 (41.71%), Query Frame = 1
Query:    1 QWYKFDDERVTKEDLKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEQDIAXXXXXXXXXXXXXXXXXXXXXXXXHLYTVIKVARDDDLLEQIGKDIYFDLVDHDKVR--SFRIQKQIPFNLFKEEVAKEFGVPVQLQRFWLWAKRQNHTYRP 519
            +W KFDD+ V++   + A+E  YGG ++                  +NAYMLVYIRES   +++  V + DI                         HLY  +++  +D      G D+Y    D +KV+   F++ K      F + +++  G P    R W    R N T RP
Sbjct:  476 KWCKFDDDVVSRCTKEEAIEHNYGGHDD-----------DLSVRHCTNAYMLVYIRESKLSEVLQAVTDHDIPQQLVERLQEEKRIEAQKRKERQEAHLYMQVQIVAEDQFCGHQGNDMY----DEEKVKYTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWPMQARSNGTKRP 635          
The following BLAST results are available for this feature:
BLAST of CX290881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UBP12_ARATH3.982e-8080.33Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabid... [more]
UBP13_ARATH2.185e-7877.47Ubiquitin carboxyl-terminal hydrolase 13 OS=Arabid... [more]
UBP5_SCHPO9.655e-1830.39Probable ubiquitin carboxyl-terminal hydrolase 5 O... [more]
UBP21_SCHPO8.458e-1430.34Ubiquitin carboxyl-terminal hydrolase 21 OS=Schizo... [more]
UBP7_RAT4.641e-1227.43Ubiquitin carboxyl-terminal hydrolase 7 OS=Rattus ... [more]
UBP7_MOUSE4.641e-1227.43Ubiquitin carboxyl-terminal hydrolase 7 OS=Mus mus... [more]
UBP7_CHICK6.062e-1226.86Ubiquitin carboxyl-terminal hydrolase 7 OS=Gallus ... [more]
UBP7_HUMAN1.034e-1126.86Ubiquitin carboxyl-terminal hydrolase 7 OS=Homo sa... [more]
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Properties
Property NameValue
Genbank descriptionC03001C05Rv OF1 Citrus clementina cDNA clone C03001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290881 ID=CX290881; Name=CX290881; organism=Citrus clementina; type=EST; length=548bp
CAGTGGTATAAATTTGATGATGAAAGGGTAACAAAAGAAGATCTGAAAAG
GGCACTAGAAGAGCAGTATGGTGGTGAAGAGGAGTTACCACAGACAAATC
CGGGATTTAACAACACTCCTTTTAAATTTACCAAATATTCGAATGCATAT
ATGCTGGTGTATATACGTGAAAGTGACAAGGACAAGATAATTTGTAATGT
GGATGAGCAGGATATTGCAGAACACCTTCGTGAAAGGTTGAAAAAAGAGC
AAGAAGAAAAAGAACACAAGAAGAAAGAGAAGGCAGAAGCACACCTTTAT
ACCGTTATCAAGGTTGCAAGGGATGATGACCTTTTGGAACAGATTGGAAA
GGATATCTATTTTGATCTTGTGGATCATGACAAAGTTAGGAGTTTTCGTA
TTCAGAAGCAGATACCTTTCAACCTTTTCAAGGAAGAGGTTGCCAAAGAG
TTTGGTGTTCCGGTGCAACTTCAGCGCTTTTGGCTGTGGGCAAAGCGTCA
AAACCATACATACCGTCCTAATAGGCCATTGACACATCTAGAAGAAAC
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