CX290913 | Citrus Genome Database

Overview


Name	CX290913
Unique Name	CX290913
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	491

Libraries


Library Name	Type
OF1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 9.140e-17
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  107 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 158

HSP 2 Score: 33.4982 bits (75), Expect = 9.140e-17
Identity = 19/49 (38.78%), Postives = 26/49 (53.06%), Query Frame = 2

Query:  185 MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSH 325
            + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSH
Sbjct:   63 LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSH 104

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.392e-16
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  106 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 157

HSP 2 Score: 31.5722 bits (70), Expect = 3.392e-16
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2

Query:  284 RILVTGGAGFIGSH 325
            RIL+TGGAGF+GSH
Sbjct:   90 RILITGGAGFVGSH 103

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.392e-16
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  106 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 157

HSP 2 Score: 31.5722 bits (70), Expect = 3.392e-16
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2

Query:  284 RILVTGGAGFIGSH 325
            RIL+TGGAGF+GSH
Sbjct:   90 RILITGGAGFVGSH 103

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.392e-16
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  106 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 157

HSP 2 Score: 31.5722 bits (70), Expect = 3.392e-16
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2

Query:  284 RILVTGGAGFIGSH 325
            RIL+TGGAGF+GSH
Sbjct:   90 RILITGGAGFVGSH 103

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.392e-16
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  106 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 157

HSP 2 Score: 31.5722 bits (70), Expect = 3.392e-16
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2

Query:  284 RILVTGGAGFIGSH 325
            RIL+TGGAGF+GSH
Sbjct:   90 RILITGGAGFVGSH 103

BLAST of CX290913 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.392e-16
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 1

Query:  331 DKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIY 489
            DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIY
Sbjct:  104 DKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIY 155

HSP 2 Score: 31.5722 bits (70), Expect = 3.392e-16
Identity = 12/14 (85.71%), Postives = 14/14 (100.00%), Query Frame = 2

Query:  284 RILVTGGAGFIGSH 325
            RIL+TGGAGF+GSH
Sbjct:   88 RILITGGAGFVGSH 101

The following BLAST results are available for this feature:

BLAST of CX290913 vs. ExPASy Swiss-Prot

BLAST of CX290913 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6


Match Name	E-value	Identity	Description
UXS1_XENTR	9.140e-17	67.92	UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro...	[more]
UXS1_RAT	3.392e-16	67.92	UDP-glucuronic acid decarboxylase 1 OS=Rattus norv...	[more]
UXS1_PONAB	3.392e-16	67.92	UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli...	[more]
UXS1_MOUSE	3.392e-16	67.92	UDP-glucuronic acid decarboxylase 1 OS=Mus musculu...	[more]
UXS1_HUMAN	3.392e-16	67.92	UDP-glucuronic acid decarboxylase 1 OS=Homo sapien...	[more]
UXS1_DANRE	3.392e-16	67.92	UDP-glucuronic acid decarboxylase 1 OS=Danio rerio...	[more]

Properties


Property Name	Value
Genbank description	C03001F05Rv OF1 Citrus clementina cDNA clone C03001F05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX290913 ID=CX290913; Name=CX290913; organism=Citrus clementina; type=EST; length=491bp
ATCCAATATTACAACCTTAAAATCGTCACTTTCAATTATTTTATCAGTTA
CCTGGAGATCTGAGAAGTTTGGTTGTGGGGTCTACATTCAGTTGATTGCT
TTACACTTTCCTTGTTTTTGAAGATTTGATTCAATTTACAACTCGAGTTT
GGTGCAGTTTGGTGTGATTTAAGAATTTCGACGAATGGCTCAGGAAATTT
CAAATGGAAATCACAACTCTGCTTCTAAACCACCTCCAACTCCGTCCCCT
TTGAGATTCTCCAAATTTTTTCAGTCCAACATGAGGATTCTGGTTACTGG
AGGAGCTGGATTTATCGGATCTCACCCTTGGACAAGTTGATGGAAAATGA
AAAGAACGAGGTGATTGTAGTTGATAACTACTTCACTGGCTCAAAGGACA
ACCTAAGGAAATGGATCGGTCACCCAAGATTTGAGCTTATTCGTCATGAT
GTGACTGAGCCATTGTTGATCGAGGTTGATCAAATTTATCA