CX290930

Overview
NameCX290930
Unique NameCX290930
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length408
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290930_ssr139 microsatellite CX290930_ssr139:139..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10970 contig Ccv1_Contig10970:216..623. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP80_SOLLC (Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.971e-43
Identity = 88/135 (65.19%), Postives = 92/135 (68.15%), Query Frame = 3 
Query:    3 EFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EFISYPISLW+                                           VS+EWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDT+KKPNNIKL
Sbjct:  200 EFISYPISLWVEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKVKEVSNEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTKKKPNNIKL 334
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_ARATH (Heat shock protein 81-3 OS=Arabidopsis thaliana GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 5.733e-43
Identity = 88/135 (65.19%), Postives = 90/135 (66.67%), Query Frame = 3 
Query:    3 EFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EFISYPISLWI                                           VSHEW LVNKQKPIWMRKPEEI KEEYAAFYKSL+NDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDT+KKPNNIKL
Sbjct:  200 EFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKL 334
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_ARATH (Heat shock protein 81-2 OS=Arabidopsis thaliana GN=HSP81-2 PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 5.733e-43
Identity = 88/135 (65.19%), Postives = 90/135 (66.67%), Query Frame = 3 
Query:    3 EFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EFISYPISLWI                                           VSHEW LVNKQKPIWMRKPEEI KEEYAAFYKSL+NDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDT+KKPNNIKL
Sbjct:  200 EFISYPISLWIEKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEKEEKKKKKIKEVSHEWDLVNKQKPIWMRKPEEINKEEYAAFYKSLSNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTKKKPNNIKL 334
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSJ (Heat shock protein 81-1 OS=Oryza sativa subsp. japonica GN=HSP81-1 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.412e-41
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 3 
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKK NNIKL
Sbjct:  256 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKL 336
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP81_ORYSI (Heat shock protein 81-1 OS=Oryza sativa subsp. indica GN=HSP81-1 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.412e-41
Identity = 79/81 (97.53%), Postives = 80/81 (98.77%), Query Frame = 3 
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKA+LFVPKRAPFDLFDTRKK NNIKL
Sbjct:  256 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAVLFVPKRAPFDLFDTRKKLNNIKL 336
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_IPONI (Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.009e-41
Identity = 84/135 (62.22%), Postives = 88/135 (65.19%), Query Frame = 3 
Query:    3 EFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EFISYPI LW                                            VSHEW L+NKQKPIW+RKPEEITKEEYA+FYKSLTNDWE+HLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKL
Sbjct:  205 EFISYPIYLWTEKTTEKEISDDEDDEPKKEEEGDIEEVDEDKEKEGKKKKKIKEVSHEWQLINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKL 339
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_TOBAC (Heat shock protein 82 (Fragment) OS=Nicotiana tabacum GN=HSP82 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.009e-41
Identity = 84/135 (62.22%), Postives = 88/135 (65.19%), Query Frame = 3 
Query:    3 EFISYPISLWIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            EFISYPI LW                                            VSHEW L+NKQKPIW+RKPEEITK+EYA+FYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKL
Sbjct:    1 EFISYPIYLWTEKTTEKEISDDEDDEPKKDEEGAVEEVDEDKEKEKGKKKKIKEVSHEWQLINKQKPIWLRKPEEITKDEYASFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKL 135
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP83_ORYSJ (Heat shock protein 81-3 OS=Oryza sativa subsp. japonica GN=HSP81-3 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 1.561e-40
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 3 
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            VSHEW+++NKQKPIW+RKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKL
Sbjct:  256 VSHEWNVMNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNNIKL 336
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP82_ORYSJ (Heat shock protein 81-2 OS=Oryza sativa subsp. japonica GN=HSP81-2 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.561e-40
Identity = 76/81 (93.83%), Postives = 80/81 (98.77%), Query Frame = 3 
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            VSHEW+++NKQKPIW+RKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKL
Sbjct:  256 VSHEWNVMNKQKPIWLRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKQNNIKL 336
[Close]
BLAST of CX290930 vs. ExPASy Swiss-Prot
Match: HSP81_ARATH (Heat shock protein 81-1 OS=Arabidopsis thaliana GN=HSP81-1 PE=1 SV=3)

HSP 1 Score: 164.081 bits (414), Expect = 2.039e-40
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 3 
Query:  165 VSHEWSLVNKQKPIWMRKPEEITKEEYAAFYKSLTNDWEEHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKL 407
            VSHEW L+NKQKPIW+RKPEEITKEEYAAFYKSLTNDWE+HLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKK NNIKL
Sbjct:  255 VSHEWELINKQKPIWLRKPEEITKEEYAAFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKLNNIKL 335
The following BLAST results are available for this feature:
BLAST of CX290930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 223
Match NameE-valueIdentityDescription
HSP80_SOLLC1.971e-4365.19Heat shock cognate protein 80 OS=Solanum lycopersi... [more]
HSP83_ARATH5.733e-4365.19Heat shock protein 81-3 OS=Arabidopsis thaliana GN... [more]
HSP82_ARATH5.733e-4365.19Heat shock protein 81-2 OS=Arabidopsis thaliana GN... [more]
HSP81_ORYSJ1.412e-4197.53Heat shock protein 81-1 OS=Oryza sativa subsp. jap... [more]
HSP81_ORYSI1.412e-4197.53Heat shock protein 81-1 OS=Oryza sativa subsp. ind... [more]
HSP83_IPONI7.009e-4162.22Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=... [more]
HSP82_TOBAC7.009e-4162.22Heat shock protein 82 (Fragment) OS=Nicotiana taba... [more]
HSP83_ORYSJ1.561e-4093.83Heat shock protein 81-3 OS=Oryza sativa subsp. jap... [more]
HSP82_ORYSJ1.561e-4093.83Heat shock protein 81-2 OS=Oryza sativa subsp. jap... [more]
HSP81_ARATH2.039e-4093.83Heat shock protein 81-1 OS=Arabidopsis thaliana GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03001H06Rv OF1 Citrus clementina cDNA clone C03001H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290930 ID=CX290930; Name=CX290930; organism=Citrus clementina; type=EST; length=408bp
CTGAGTTCATTAGTTACCCAATTTCCCTCTGGATTGAGAAGACCACTGAG
AAGGAGATTTCTGATGATGAGGACGAGGAAGAAAAGAAGGATGAGGAGGG
TAAAGTTGAGGATGTTGATGAAGAGAAAGAGAAGGAAGAGAAGAAGAAGA
AGAAGATCAAGGAGGTGTCCCATGAGTGGTCATTGGTGAACAAGCAGAAA
CCCATTTGGATGAGGAAACCCGAGGAGATTACAAAAGAAGAGTATGCTGC
CTTCTACAAGAGTCTGACTAATGACTGGGAGGAGCACTTGGCTGTGAAGC
ACTTCTCAGTTGAGGGCCAGCTTGAGTTTAAGGCTATCCTCTTTGTTCCC
AAGAGGGCACCTTTTGATCTCTTTGACACAAGGAAGAAGCCCAATAACAT
CAAGCTCT
back to top