CX290936

Overview
NameCX290936
Unique NameCX290936
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4698 contig Ccv1_Contig4698:857..1469. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_XENTR (WD repeat-containing protein 70 OS=Xenopus tropicalis GN=wdr70 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.674e-38
Identity = 83/189 (43.92%), Postives = 109/189 (57.67%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 563
            D YI D+ NTKGH   L  G WHPK KE  +T S DG++R WDV+  K  K V KP+  +  RV  T C +  DGK IA G  DGSIQ+W+      ++   H  + H+   D + + FS  G IL +R  D +LK WD+RK K PL V   L N +  T+  FSPD++L +TGTSV+R    G L+ F
Sbjct:  238 DQYIVDMANTKGHTAMLNGGCWHPKIKEEFMTCSNDGTVRTWDVSNEKKHKGVFKPRSMQGKRVIPTCCTYSRDGKFIAAGCQDGSIQIWDRNMSVHTK--FHCRQAHTPGTDTSCVTFSYAGNILATRGGDDTLKTWDIRKFKNPLNVASGLANYFPMTDCCFSPDDKLLITGTSVKRGGGDGKLMFF 424          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_XENLA (WD repeat-containing protein 70 OS=Xenopus laevis GN=wdr70 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.110e-37
Identity = 81/189 (42.86%), Postives = 108/189 (57.14%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 563
            D YI D+ NTKGH   L  G WHPK KE  +T S DG++R WDV+  K  K + KP+  +   V  T C +  DGK IA G  DGSIQ+W+      ++   H  + H+   D + + FS  G +L +R  D +LK WD+RK K PL V   L N +  T+  FSPD++L +TGTSV+R    G LL F
Sbjct:  238 DQYIVDMANTKGHTAMLNGGCWHPKIKEEFMTCSNDGTVRTWDVSNEKKHKGIFKPRSVQGKPVIPTCCTYSRDGKFIAAGCQDGSIQIWDRNMSVHTK--FHCRQAHTPGTDTSCVTFSYGGNVLATRGGDDTLKTWDIRKFKNPLNVASGLENFFPMTDCCFSPDDKLLITGTSVKRGIGDGKLLFF 424          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_RAT (WD repeat-containing protein 70 OS=Rattus norvegicus GN=Wdr70 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.305e-37
Identity = 78/192 (40.62%), Postives = 111/192 (57.81%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHS--DDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 572
            D YI D+ NTKGH   L  G WHPK K   +T S D ++R+W+V   K QK V KP+  +  +V  TTC +  DG  +A    +GSIQ+W+        P  H ++ H+   D + + FS DG +L SR  D +LK+WD+R+  +PL    DLP  +  T+  FSPD++L +TGTSV+R   +G L+ F  R
Sbjct:  271 DQYIVDMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRLWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDGNLVAAACQNGSIQIWD--RNLTVHPKFHYKQAHAPGTDTSCVAFSYDGNVLASRGGDDTLKLWDVRQFNKPLFSASDLPTLFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERR 460          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_HUMAN (WD repeat-containing protein 70 OS=Homo sapiens GN=WDR70 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.016e-36
Identity = 78/192 (40.62%), Postives = 108/192 (56.25%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGHSD--DITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 572
            D YI D+ NTKGH   L  G WHPK K   +T S D ++R W+V   K QK V KP+  +  +V  TTC +  DG  IA    +GSIQ+W+        P  H ++ H    D + + FS DG +L SR  D SLK+WD+R+  +PL     LP  +  T+  FSPD++L +TGTS++R   +G L+ F  R
Sbjct:  270 DQYIVDMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDGNLIAAACQNGSIQIWD--RNLTVHPKFHYKQAHDSGTDTSCVTFSYDGNVLASRGGDDSLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSIQRGCGSGKLVFFERR 459          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_BOVIN (WD repeat-containing protein 70 OS=Bos taurus GN=WDR70 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 5.865e-36
Identity = 78/192 (40.62%), Postives = 108/192 (56.25%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH--SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCFYDR 572
            D YI D+ NTKGH   L  G WHPK K   +T S D ++R W+V   K QK V KP+  +  +V  TTC +  DG  IA    +GSIQ+W+        P  H ++ H    D + + FS DG +L SR  D +LK+WD+R+  +PL     LP  +  T+  FSPD++L +TGTSV+R   +G L+ F  R
Sbjct:  268 DQYIVDMANTKGHTAMLHTGSWHPKIKGEFMTCSNDATVRTWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDGSLIAAACQNGSIQIWD--RNLTVHPKFHYKQAHDPGTDTSCVTFSYDGTVLASRGGDDTLKLWDIRQFNKPLFSASGLPTMFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLVFFERR 457          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: WDR70_MOUSE (WD repeat-containing protein 70 OS=Mus musculus GN=Wdr70 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.706e-35
Identity = 75/187 (40.11%), Postives = 107/187 (57.22%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH--SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLL 557
            D YI D+ NTKGH   L    WHPK K   +T S D ++R+W+V   K QK V KP+  +  +V  TTC +  DG  +A    +GSIQ+W+        P  H ++ H    D + + FS DG +L SR  D +LK+WD+R+  +PL    DLP  +  T+  FSPD++L +TGTSV+R   +G L+
Sbjct:  273 DQYIVDMANTKGHTAMLHTDSWHPKIKGEFMTCSNDATVRLWEVENPKKQKSVFKPRTMQGKKVIPTTCTYSRDGNLVAAACQNGSIQIWD--RNLTVHPKFHYKQAHDPGTDTSCVAFSYDGNVLASRGGDDTLKLWDVRQFNKPLFSASDLPTLFPMTDCCFSPDDKLIVTGTSVQRGCGSGKLV 457          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: GAD1_CAEEL (Gastrulation defective protein 1 OS=Caenorhabditis elegans GN=gad-1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.138e-32
Identity = 79/197 (40.10%), Postives = 109/197 (55.33%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFK-------SQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSR---PDIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGLLCF 563
            D YI DL  TKGH   + C E++P  K   ++ S+DGSLR+W++++ K         ++VIK K A   RV+   C +  DGK IA G  DGS+Q W     +GS+    +  V K H+  IT++ FS D + LLSR FD +LK+W L   KEPL V   L N +  T+  FSP  ++  TGTS   + T G L  F
Sbjct:  211 DQYIIDLNITKGHTATVNCVEFNPLNKNEFISCSDDGSLRLWNLDDHKVITKCINKHRKVIKTKGANGKRVSPQVCTFSPDGKWIAAGCDDGSVQAWK----YGSQYVNVNYLVRKAHNGSITSIAFSPDSKRLLSRGFDDTLKMWSLDNPKEPLLVKTGLENAFKSTDCGFSPRAEVVFTGTSSPNKDTPGTLQFF 403          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: GAD1_DROME (Gastrulation defective protein 1 homolog OS=Drosophila melanogaster GN=CG5543 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.159e-30
Identity = 74/188 (39.36%), Postives = 109/188 (57.98%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVAVTTCAWDCDGKCIAGGIGDGSIQVWNLKPGWGSRP----DIHVEKGHSDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVERESTTGGL 554
            D YI D+  TKGH+  LT G WHP  +E  LT++ DG+LRIW   + K Q QVIK +     R    +C ++ D   IA G  DGSIQ W+ +  + +      D H +KG   +IT++ FS  G+ L +RS D ++K+WDLR+ K+PL  + +L + Y  T+  FSPD++L +TG S+ +      L
Sbjct:  270 DQYISDMSRTKGHVAQLTSGCWHPFNREQFLTAALDGTLRIWQGLKSKEQLQVIKTRAQGGLRTNAASCNFNRDATLIAAGCVDGSIQTWDTRKMFVNTTHCVRDAH-QKG--SEITSIVFSYMGQQLATRSNDETMKLWDLRQFKQPLHTWTNLFSRYDTTDCCFSPDDRLLVTGESLPKGQAEANL 454          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: YIPH_SCHPO (Uncharacterized WD repeat-containing protein C343.17c OS=Schizosaccharomyces pombe GN=SPAC343.17c PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.891e-26
Identity = 72/181 (39.78%), Postives = 99/181 (54.70%), Query Frame = 3
Query:    3 DMYIRDLKNTKGHICGLTCGEWHPKTKETILTSSEDGSLRIWDVNEFKSQKQVI--KPKLARPG--RVAVTTCAWD-CDGKCIAGGIGDGSIQVWNLKPGWGSRPDIHVEKGH--SDDITALKFSSDGRILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTS 524
            D YIR++ NTKGHI  +T G W P + +  LT+  D + RIWDVN  KSQ +V    P+ +  G  R+ VT+CAW+       A  + DGSIQ W  K     RP + ++  H     I+ L FS DG  LLSR  D +L+VWDLR   + +    D+    A  N  FSP ++L L G++
Sbjct:  184 DQYIRNMYNTKGHIAEITDGCWQPDSSQIFLTTGYDSTARIWDVNRTKSQLEVFVHVPEGSHTGLSRIPVTSCAWNPAKPDNFATAVLDGSIQFWQ-KGSRTKRPVMKIKDAHLPQQGISCLSFSQDGNYLLSRGEDNALRVWDLRNSNKCVNERIDILTPKAGGNAIFSPTQKLILAGST 363          
BLAST of CX290936 vs. ExPASy Swiss-Prot
Match: HAT2_USTMA (Histone acetyltransferase type B subunit 2 OS=Ustilago maydis GN=HAT2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.906e-12
Identity = 48/159 (30.19%), Postives = 76/159 (47.80%), Query Frame = 3
Query:   66 WHPKTKETILTSSEDGSLRIWDVNEFKSQKQVIKPKLARPGRVA-VTTCAWDCDGKCIAGGIGDG-SIQVWNLKPGWGSRPDIHVEKGHSDDITALKFSSDG-RILLSRSFDGSLKVWDLRKMKEPLKVFEDLPNNYAQTNVAFSPDEQLFLTGTSVER 533
            W P  +  IL +SED ++  WD+N +      ++P     G  A V   AW    + + G +GD   + +W+++    S P   VE  H+ ++ AL FS +   IL++ S D S+ VWDLR +K  L   E   +     +V +SP     L   S +R
Sbjct:  249 WSPLKQGHILAASEDTTVCHWDINNYTKPNNTLQPSATYTGHTAIVEDVAWHNHHESLFGSVGDDRQLLIWDIREP-ASAPKYRVE-AHTGEVNALAFSPENENILVTGSSDKSVGVWDLRNLKVKLHSLESHTDEI--LSVCWSPHHATVLASASADR 403          
The following BLAST results are available for this feature:
BLAST of CX290936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
WDR70_XENTR3.674e-3843.92WD repeat-containing protein 70 OS=Xenopus tropica... [more]
WDR70_XENLA3.110e-3742.86WD repeat-containing protein 70 OS=Xenopus laevis ... [more]
WDR70_RAT5.305e-3740.63WD repeat-containing protein 70 OS=Rattus norvegic... [more]
WDR70_HUMAN2.016e-3640.63WD repeat-containing protein 70 OS=Homo sapiens GN... [more]
WDR70_BOVIN5.865e-3640.63WD repeat-containing protein 70 OS=Bos taurus GN=W... [more]
WDR70_MOUSE1.706e-3540.11WD repeat-containing protein 70 OS=Mus musculus GN... [more]
GAD1_CAEEL5.138e-3240.10Gastrulation defective protein 1 OS=Caenorhabditis... [more]
GAD1_DROME2.159e-3039.36Gastrulation defective protein 1 homolog OS=Drosop... [more]
YIPH_SCHPO1.891e-2639.78Uncharacterized WD repeat-containing protein C343.... [more]
HAT2_USTMA5.906e-1230.19Histone acetyltransferase type B subunit 2 OS=Usti... [more]

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Properties
Property NameValue
Genbank descriptionC03002A01Rv OF1 Citrus clementina cDNA clone C03002A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290936 ID=CX290936; Name=CX290936; organism=Citrus clementina; type=EST; length=613bp
GTGATATGTATATACGTGATCTGAAAAACACAAAGGGCCACATTTGTGGA
TTGACTTGTGGAGAGTGGCATCCTAAAACTAAAGAGACAATTTTGACATC
ATCAGAGGATGGATCACTTCGCATTTGGGATGTAAATGAATTCAAAAGTC
AGAAGCAGGTTATCAAACCAAAGCTTGCAAGGCCTGGAAGGGTTGCAGTT
ACCACATGTGCTTGGGATTGTGATGGGAAATGCATTGCAGGTGGTATAGG
AGATGGTTCTATACAGGTGTGGAACCTTAAGCCTGGATGGGGGAGCAGGC
CAGATATTCATGTTGAAAAAGGTCATTCTGATGATATTACTGCACTTAAG
TTTTCTAGTGATGGGCGAATTCTGCTCTCAAGGAGCTTTGATGGTTCATT
GAAGGTTTGGGATTTGCGCAAAATGAAAGAGCCTCTTAAGGTGTTTGAGG
ATCTCCCCAATAACTATGCCCAAACAAATGTAGCATTTAGTCCTGATGAA
CAACTTTTCTTGACTGGAACATCTGTGGAAAGAGAGAGCACAACAGGAGG
TCTTCTATGCTTTTATGATAGGGAAGAAACTGGAACTTGGTTTCCAGAGT
TGGAATATCACCC
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