CX290939

Overview
NameCX290939
Unique NameCX290939
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290939_ssr1 microsatellite CX290939_ssr1:1..14. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6567 contig Ccv1_Contig6567:15..517. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AFB_ARATH (Splicing factor U2af small subunit B OS=Arabidopsis thaliana GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 1.214e-66
Identity = 117/148 (79.05%), Postives = 128/148 (86.49%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVDPQGQ LDP KIQDH            +K+GE+ESLN+CDNLADHM+GNVYV F+EE+HAA AL+ L GRFY+GRPII DFSPVTD
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEEDHAAAALQALQGRFYSGRPIIADFSPVTD 148          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AFA_ARATH (Splicing factor U2af small subunit A OS=Arabidopsis thaliana GN=U2AF35A PE=1 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 6.024e-66
Identity = 118/148 (79.73%), Postives = 127/148 (85.81%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P+ISPTLLLSNMYQRPDMITPGVD QGQ LDPRKIQ+H             K+GEIESLNICDNLADHM+GNVYVQF+EE+ AA AL+ L GRFY+GRPII DFSPVTD
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITPGVDAQGQPLDPRKIQEHFEDFFEDLFEELGKFGEIESLNICDNLADHMIGNVYVQFKEEDQAAAALQALQGRFYSGRPIIADFSPVTD 148          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AFB_ORYSJ (Splicing factor U2af small subunit B OS=Oryza sativa subsp. japonica GN=U2AF35B PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 1.389e-62
Identity = 108/148 (72.97%), Postives = 125/148 (84.46%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH +P++SPT++L+NMYQRPDMITPGVD QGQ +DP K+Q+H            SK+GE+E+LN+CDNLADHM+GNVYVQFREEE A  A   L GRFY+GRPIIV++SPVTD
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITPGVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEEQAVAAHNALQGRFYSGRPIIVEYSPVTD 148          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AFA_ORYSJ (Splicing factor U2af small subunit A OS=Oryza sativa subsp. japonica GN=U2AF35A PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 3.094e-62
Identity = 111/148 (75.00%), Postives = 123/148 (83.11%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDHXXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH KPS+SPTLLLSNMY RPDMITPG+D QG  +DP KIQ              SKYGEIESL++CDN ADHM+GNVYVQFREE+ AA AL+ L GR+Y+GRPIIV+FSPV+D
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPSVSPTLLLSNMYLRPDMITPGIDAQGNPIDPEKIQADFEDFYEDIFEELSKYGEIESLHVCDNFADHMIGNVYVQFREEDQAARALQALTGRYYSGRPIIVEFSPVSD 148          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF1_MOUSE (Splicing factor U2AF 35 kDa subunit OS=Mus musculus GN=U2af1 PE=2 SV=4)

HSP 1 Score: 168.703 bits (426), Expect = 1.351e-41
Identity = 81/149 (54.36%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 149          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF1_HUMAN (Splicing factor U2AF 35 kDa subunit OS=Homo sapiens GN=U2AF1 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 1.351e-41
Identity = 81/149 (54.36%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 149          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF1_BOVIN (Splicing factor U2AF 35 kDa subunit OS=Bos taurus GN=U2AF1 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.351e-41
Identity = 81/149 (54.36%), Postives = 103/149 (69.13%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T+ L N+Y+ P   +   D    A+   ++Q+H              KYGE+E +N+CDNL DH+VGNVYV+FR EE A  A+ +LN R++ G+PI  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQSADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELSPVTD 149          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF4_RAT (Splicing factor U2AF 26 kDa subunit OS=Rattus norvegicus GN=U2af1l4 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.144e-40
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTD 149          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF4_MOUSE (Splicing factor U2AF 26 kDa subunit OS=Mus musculus GN=U2af1l4 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.144e-40
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVAELNNRWFNGQAVHAELSPVTD 149          
BLAST of CX290939 vs. ExPASy Swiss-Prot
Match: U2AF4_BOVIN (Splicing factor U2AF 26 kDa subunit OS=Bos taurus GN=U2AF1L4 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.951e-40
Identity = 79/149 (53.02%), Postives = 100/149 (67.11%), Query Frame = 1
Query:   58 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPSISPTLLLSNMYQRPDMITPGVDPQGQALDPRKIQDH-XXXXXXXXXXXXSKYGEIESLNICDNLADHMVGNVYVQFREEEHAANALRNLNGRFYAGRPIIVDFSPVTD 501
            MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLH KP+ S T++L N+Y+ P       D     +   ++Q+H              KYGEIE +N+CDNL DH+VGNVYV+FR EE A  A+  LN R++ G+ +  + SPVTD
Sbjct:    1 MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQTADGSHCHVSDVEVQEHYDNFFEEVFTELQEKYGEIEEMNVCDNLGDHLVGNVYVKFRREEDAERAVVELNNRWFNGQAVHAELSPVTD 149          
The following BLAST results are available for this feature:
BLAST of CX290939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
U2AFB_ARATH1.214e-6679.05Splicing factor U2af small subunit B OS=Arabidopsi... [more]
U2AFA_ARATH6.024e-6679.73Splicing factor U2af small subunit A OS=Arabidopsi... [more]
U2AFB_ORYSJ1.389e-6272.97Splicing factor U2af small subunit B OS=Oryza sati... [more]
U2AFA_ORYSJ3.094e-6275.00Splicing factor U2af small subunit A OS=Oryza sati... [more]
U2AF1_MOUSE1.351e-4154.36Splicing factor U2AF 35 kDa subunit OS=Mus musculu... [more]
U2AF1_HUMAN1.351e-4154.36Splicing factor U2AF 35 kDa subunit OS=Homo sapien... [more]
U2AF1_BOVIN1.351e-4154.36Splicing factor U2AF 35 kDa subunit OS=Bos taurus ... [more]
U2AF4_RAT1.144e-4053.02Splicing factor U2AF 26 kDa subunit OS=Rattus norv... [more]
U2AF4_MOUSE1.144e-4053.02Splicing factor U2AF 26 kDa subunit OS=Mus musculu... [more]
U2AF4_BOVIN1.951e-4053.02Splicing factor U2AF 26 kDa subunit OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionC03002A04Rv OF1 Citrus clementina cDNA clone C03002A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290939 ID=CX290939; Name=CX290939; organism=Citrus clementina; type=EST; length=503bp
GAGAGAGAGAGAGAGCAAAATCATTGAGCACATCAGAGTCTCAGCAGAGA
GGGGAGTATGGCGGAGCACTTAGCTTCAATATTCGGAACCGAAAAGGACA
GAGTAAACTGTCCGTTCTATTTCAAGATCGGCGCGTGCAGGCACGGCGAT
CGATGCTCTCGGCTTCATACGAAGCCCAGCATCAGCCCCACACTCCTCCT
CTCCAACATGTACCAACGCCCCGACATGATCACTCCCGGCGTTGACCCGC
AGGGCCAGGCCCTTGACCCTCGCAAGATCCAAGATCACTTCGAGGATTTT
TACGAGGATCTGTTCGAGGAACTAAGCAAGTACGGCGAGATTGAGAGCTT
GAACATCTGTGACAATTTGGCCGATCACATGGTCGGTAACGTGTATGTTC
AGTTTAGAGAAGAAGAACATGCTGCTAATGCTCTTCGCAATCTCAATGGG
AGGTTCTATGCAGGGCGCCCCATCATTGTCGACTTCTCTCCTGTCACGGA
TTT
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