CX290941

Overview
NameCX290941
Unique NameCX290941
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig333 contig Ccv1_Contig333:1..299. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX290941 vs. ExPASy Swiss-Prot
Match: CCD1_PHAVU (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.225e-12
Identity = 32/53 (60.38%), Postives = 40/53 (75.47%), Query Frame = 3 
Query:  141 KGNSGDSGIVAVNPKPQKGLAAKVIDSLEGLIVKFKHDSSRPLHYLSGNFGPV 299
            K N  + G+V V+PKP  G ++KVID LE L+VKF +DSS P HYL+GNFGPV
Sbjct:    6 KKNGAEGGLVKVDPKPTNGFSSKVIDLLEKLLVKFLYDSSLPHHYLTGNFGPV 58
[Close]
BLAST of CX290941 vs. ExPASy Swiss-Prot
Match: CCD1_ARATH (Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Arabidopsis thaliana GN=CCD1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.423e-11
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 3 
Query:  150 SGDSGIVAVNPKPQKGLAAKVIDSLEGLIVKFKHDSSRPLHYLSGNFGPV 299
            S  S I++V+P+P KG ++K++D LE L+VK  HD+S PLHYLSGNF P+
Sbjct:    6 SDGSSIISVHPRPSKGFSSKLLDLLERLVVKLMHDASLPLHYLSGNFAPI 55
The following BLAST results are available for this feature:
BLAST of CX290941 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCD1_PHAVU5.225e-1260.38Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
CCD1_ARATH4.423e-1156.00Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=... [more]
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Properties
Property NameValue
Genbank descriptionC03002A08Rv OF1 Citrus clementina cDNA clone C03002A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290941 ID=CX290941; Name=CX290941; organism=Citrus clementina; type=EST; length=299bp
ATTTTGCGGGAGTTAGTTGTTTAACGGCTTCTTCCAGTAATCAACGTCGC
ATCAACTCCAACATTTACTGTAAAAAACACACAGTTGTCACCAACGGAGA
TAGAACGGTGACGGCGGAGGAGAGGCCGAAATTAAACTTGAAGGGCAACA
GCGGAGATAGTGGTATTGTGGCGGTGAATCCAAAGCCGCAGAAAGGGTTG
GCCGCTAAGGTAATCGACTCTCTGGAAGGACTGATTGTGAAATTCAAGCA
CGACTCGTCACGGCCTCTTCACTATCTCTCCGGTAATTTCGGCCCGGTT
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