CX290944

Overview
NameCX290944
Unique NameCX290944
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length383
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig696 contig Ccv1_Contig696:375..757. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.046e-36
Identity = 77/97 (79.38%), Postives = 85/97 (87.63%), Query Frame = 3
Query:    3 RINGRLAMIGFVAALGVEISKGQDVFAQLSXGGVAWFLGTSVLLTXASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 293
            RINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL+ ASL+P F+GVSVESKS   M+SDAE WNGR AMLGLVALAFTEFVKG +LV
Sbjct:  100 RINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.160e-33
Identity = 64/97 (65.98%), Postives = 84/97 (86.60%), Query Frame = 3
Query:    3 RINGRLAMIGFVAALGVEISKGQDVFAQLSXGGVAWFLGTSVLLTXASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 293
            RINGR AMIGFVAA+GVE++ G+DVF+Q+  GGV WFL TS +L  A+L+P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALAFTE+VKGG L+
Sbjct:  101 RINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.868e-26
Identity = 60/99 (60.61%), Postives = 74/99 (74.75%), Query Frame = 3
Query:    3 RINGRLAMIGFVAALGVEISKGQDVFAQLSX--GGVAWFLGTSVLLTXASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 293
            RINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + + ASL+PL +G SVESKS G  ++DAELWNGRFAMLGLVALA TEF+ G   V
Sbjct:  131 RINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.732e-23
Identity = 55/98 (56.12%), Postives = 68/98 (69.39%), Query Frame = 3
Query:    3 RINGRLAMIGFVAALGVEISKGQDVFAQLSXG-GVAWFLGTSVLLTXASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKGGTLV 293
            RINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L+ ASLVPL +G S E ++   M ++AELWNGRFAMLGLVALA TE + G   +
Sbjct:   73 RINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.858e-23
Identity = 54/94 (57.45%), Postives = 67/94 (71.28%), Query Frame = 3
Query:    3 RINGRLAMIGFVAALGVEISKGQDVFAQLSXG-GVAWFLGTSVLLTXASLVPLFKGVSVESKSDGFMTSDAELWNGRFAMLGLVALAFTEFVKG 281
            RINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L+ ASLVPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G
Sbjct:   68 RINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITG 161          
BLAST of CX290944 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.173e-13
Identity = 46/94 (48.94%), Postives = 56/94 (59.57%), Query Frame = 3
Query:    6 INGRLAMIGFVAALGVEISKGQDVFAQLSXGGVAWFLGTSVLLTXASLVPLFKGVSVESKSD--GFMTSDAELWNGRFAMLGLVALAFTEFVKG 281
            INGRLAM+GFVAALG E+S G+ V  QL        L T VL + ASL+P F       K D  G  T DAE+ NGRFAM+G  A+   E ++G
Sbjct:   80 INGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQG 168          
The following BLAST results are available for this feature:
BLAST of CX290944 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA1.046e-3679.38Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL9.160e-3365.98Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU4.868e-2660.61High molecular mass early light-inducible protein ... [more]
ELI9_HORVU1.732e-2356.12Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.858e-2357.45Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA6.173e-1348.94Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionC03002A12Rv OF1 Citrus clementina cDNA clone C03002A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290944 ID=CX290944; Name=CX290944; organism=Citrus clementina; type=EST; length=383bp
AGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTGCATTGGGG
GTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCANACGGTGG
GGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGNTGCGTCCCTGG
TTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATGGGTTCATG
ACTTCGGATGCTGAGTTGTGGAATGGGAGGTTTGCTATGCTGGGCCTTGT
TGCTTTGGCTTTCACCGAGTTTGTTAAGGGTGGCACCCTTGTTTAAGCTT
AATTTTGTTTAGATCTGTAGATCTGTATTTTTTTTAACTAATTAATGTAT
GAGATCCTACTGTAATTAAATCTCTAAAAAAAA
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