CX290949

Overview
NameCX290949
Unique NameCX290949
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length483
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290949_ssr48 microsatellite CX290949_ssr48:48..62. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11580 contig Ccv1_Contig11580:241..723. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJH_CUCSA (DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.188e-49
Identity = 107/161 (66.46%), Postives = 108/161 (67.08%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXX-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGEDALKE        HDPFDI                        EDVIHPLKVSLEDLYNGTSKKLSLSRNVI                    QGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRC QCKGEKV+QEKKVLEVIVEK
Sbjct:   67 EIYDQYGEDALKEGMGGGG-GHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCSQCKGEKVVQEKKVLEVIVEK 226          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJH_ATRNU (DnaJ protein homolog ANJ1 OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 1.188e-49
Identity = 102/161 (63.35%), Postives = 108/161 (67.08%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXX-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLEDL+ GT+KKLSLSRNVI                    QG+GMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKV+QEKKVLEV+VEK
Sbjct:   68 EIYDQYGEDALKEGMGGGGGMHDPFDIFQSFFGGSPFGGVGSSRGRRQRRGEDVVHPLKVSLEDLFTGTTKKLSLSRNVICSKCTGKGSKSGASMKCSGCQGTGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVVQEKKVLEVVVEK 228          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJH1_ALLPO (DnaJ protein homolog 1 (Fragment) OS=Allium porrum GN=DNAJ1 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 5.519e-47
Identity = 100/161 (62.11%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXX-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLE+LYNGTSKKLSLSRNVI                    QGSGMKVSIR LGP MIQQMQHPCN+CKGTGE INDKDRCP CKGEKV+QEKKVLEV VEK
Sbjct:   47 EIYDQYGEDALKEGMGGGGGDHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSGASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEKKVLEVHVEK 207          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJH2_ALLPO (DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 9.415e-47
Identity = 98/161 (60.87%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXX-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGE+ LKE        HDPFDI                        EDV+HPLKVSLEDLYNGTSKKLSLSRNV+                    QGSGMKVSIR LGP MIQQMQHPCNECKGTGE I+DKDRCPQCKGEKV+Q+KKVLEV VEK
Sbjct:   68 EIYDQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEDLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHPCNECKGTGEMISDKDRCPQCKGEKVVQQKKVLEVHVEK 228          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNAJ3_ARATH (Chaperone protein dnaJ 3 OS=Arabidopsis thaliana GN=ATJ3 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 4.672e-46
Identity = 96/160 (60.00%), Postives = 101/160 (63.12%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGEDALKE        HDPFDI                       EDV+HPLKVSLED+Y GT KKLSLSRN +                    QGSGMKVSIR LGP MIQQMQH CNECKGTGETIND+DRCPQCKG+KVI EKKVLEV VEK
Sbjct:   69 EIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGGGPFGGNTSRQRRQRRGEDVVHPLKVSLEDVYLGTMKKLSLSRNALCSKCNGKGSKSGASLKCGGCQGSGMKVSIRQLGPGMIQQMQHACNECKGTGETINDRDRCPQCKGDKVIPEKKVLEVNVEK 228          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNAJ2_ARATH (Chaperone protein dnaJ 2 OS=Arabidopsis thaliana GN=ATJ2 PE=1 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 8.248e-43
Identity = 90/161 (55.90%), Postives = 100/161 (62.11%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXX-EDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            EIYDQYGEDALKE        HDPFDI                        EDV+HPLKVSLED+Y GT+KKLSLSR  +                    QGSGMK+SIR  GP M+QQ+QH CN+CKGTGETIND+DRCPQCKGEKV+ EKKVLEV VEK
Sbjct:   69 EIYDQYGEDALKEGMGGGGGGHDPFDIFSSFFGSGGHPFGSHSRGRRQRRGEDVVHPLKVSLEDVYLGTTKKLSLSRKALCSKCNGKGSKSGASMKCGGCQGSGMKISIRQFGPGMMQQVQHACNDCKGTGETINDRDRCPQCKGEKVVSEKKVLEVNVEK 229          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJA2_RAT (DnaJ homolog subfamily A member 2 OS=Rattus norvegicus GN=Dnaja2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.778e-29
Identity = 65/160 (40.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            E+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+LEV V+K
Sbjct:   64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDK 223          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJA2_MOUSE (DnaJ homolog subfamily A member 2 OS=Mus musculus GN=Dnaja2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.778e-29
Identity = 65/160 (40.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            E+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+LEV V+K
Sbjct:   64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDK 223          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJA2_HUMAN (DnaJ homolog subfamily A member 2 OS=Homo sapiens GN=DNAJA2 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.778e-29
Identity = 65/160 (40.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            E+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+LEV V+K
Sbjct:   64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDK 223          
BLAST of CX290949 vs. ExPASy Swiss-Prot
Match: DNJA2_BOVIN (DnaJ homolog subfamily A member 2 OS=Bos taurus GN=DNAJA2 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 6.778e-29
Identity = 65/160 (40.62%), Postives = 87/160 (54.37%), Query Frame = 3
Query:    3 EIYDQYGEDALKEXXXXXXXAHDPFDIXXXXXXXXXXXXXXXXXXXXXXXEDVIHPLKVSLEDLYNGTSKKLSLSRNVIXXXXXXXXXXXXXXXXXXXXQGSGMKVSIRHLGPSMIQQMQHPCNECKGTGETINDKDRCPQCKGEKVIQEKKVLEVIVEK 482
            E+YD+YGE  L+E         D F                         ED++HPLKVSLEDLYNG + KL LS+NV+                    +G G+++ IR L P M+QQMQ  C++C G GE IN+KDRC +C+G+KVI+E K+LEV V+K
Sbjct:   64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFSFMGNQSRSRNGRRRGEDMMHPLKVSLEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQSVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDK 223          
The following BLAST results are available for this feature:
BLAST of CX290949 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DNJH_CUCSA1.188e-4966.46DnaJ protein homolog OS=Cucumis sativus GN=DNAJ1 P... [more]
DNJH_ATRNU1.188e-4963.35DnaJ protein homolog ANJ1 OS=Atriplex nummularia P... [more]
DNJH1_ALLPO5.519e-4762.11DnaJ protein homolog 1 (Fragment) OS=Allium porrum... [more]
DNJH2_ALLPO9.415e-4760.87DnaJ protein homolog 2 OS=Allium porrum GN=LDJ2 PE... [more]
DNAJ3_ARATH4.672e-4660.00Chaperone protein dnaJ 3 OS=Arabidopsis thaliana G... [more]
DNAJ2_ARATH8.248e-4355.90Chaperone protein dnaJ 2 OS=Arabidopsis thaliana G... [more]
DNJA2_RAT6.778e-2940.63DnaJ homolog subfamily A member 2 OS=Rattus norveg... [more]
DNJA2_MOUSE6.778e-2940.63DnaJ homolog subfamily A member 2 OS=Mus musculus ... [more]
DNJA2_HUMAN6.778e-2940.63DnaJ homolog subfamily A member 2 OS=Homo sapiens ... [more]
DNJA2_BOVIN6.778e-2940.63DnaJ homolog subfamily A member 2 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC03002B05Rv OF1 Citrus clementina cDNA clone C03002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290949 ID=CX290949; Name=CX290949; organism=Citrus clementina; type=EST; length=483bp
GTGAAATATATGATCAATACGGCGAGGATGCGCTTAAAGAGGGAATGGGT
GGTGGTGGTGGTGCCCATGACCCATTCGACATATTCCAATCCTTCTTCGG
TGGCAGCCCATTTGGTGGTGGGAGCAGCAGAGGAAGAAGGCAAAGGAGGG
GAGAGGATGTAATCCATCCCCTCAAGGTTTCTTTGGAGGATCTCTACAAT
GGGACATCTAAGAAGCTCTCGCTCTCCCGCAATGTAATCTGCACCAAGTG
CAAAGGGAAGGGGTCTAAGTCAGGTGCATCAATGAAATGTTCTGGCTGCC
AGGGATCTGGAATGAAAGTTTCAATAAGACACCTTGGCCCCTCTATGATT
CAACAAATGCAGCATCCTTGCAATGAGTGCAAGGGTACTGGAGAAACAAT
CAATGACAAGGATCGCTGCCCACAATGTAAGGGTGAGAAGGTCATTCAGG
AGAAAAAAGTCTTGGAGGTTATTGTTGAGAAGG
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