CX290950

Overview
NameCX290950
Unique NameCX290950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length590
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10271 contig Ccv1_Contig10271:289..878. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP7_ARATH (Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabidopsis thaliana GN=UBP7 PE=1 SV=1)

HSP 1 Score: 255.373 bits (651), Expect = 1.562e-67
Identity = 132/196 (67.35%), Postives = 147/196 (75.00%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDQ*KPFSVLILXAECIXXXXXXXXXXXNQFMLFKCHIS 588
            GQ+LMMMGTADEIVKAPEKGPVF+EDLPEE+Q  +LG+SAGL NLGNTCYMNST+QCL SVPELKS L  Y QS R+ DVDQ+SHMLTVAT ELF++LDKSVK VAPM FWM+L+KKYPQF QLHNG  MQQDAEECWTQ+LYTLSQSL+  + SE PD  K    L L                      KCHIS
Sbjct:   65 GQKLMMMGTADEIVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQCLISVPELKSELSNY-QSARTKDVDQTSHMLTVATRELFSELDKSVKAVAPMPFWMVLQKKYPQFAQLHNGNHMQQDAEECWTQMLYTLSQSLKLPSPSEDPDAVKALFGLNLLNRLHCQESSEESSETESVFSLKCHIS 259          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP6_ARATH (Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabidopsis thaliana GN=UBP6 PE=1 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 9.477e-65
Identity = 127/196 (64.80%), Postives = 142/196 (72.45%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQLHNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPDQ*KPFSVLILXAECIXXXXXXXXXXXNQFMLFKCHIS 588
            GQ+LMMMGTADEIVKAPEK  VF EDLPEE    +LG+SAGL NLGNTCYMNST+QCL SVPELKSAL  YS + RSNDVDQ+SHMLTVAT ELF +LD+SV  V+P QFWM+LRKKYPQF QL NG  MQQDAEECWTQLLYTLSQSL++  +SE  D  K    + L +                    KCHIS
Sbjct:   65 GQKLMMMGTADEIVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNSTVQCLKSVPELKSALSNYSLAARSNDVDQTSHMLTVATRELFGELDRSVNAVSPSQFWMVLRKKYPQFSQLQNGMHMQQDAEECWTQLLYTLSQSLKAPTSSEGADAVKALFGVNLQSRLHCQESGEESSETESVYSLKCHIS 260          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP14_PANTR (Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan troglodytes GN=USP14 PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 2.605e-30
Identity = 63/160 (39.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPD 477
            G  L+MMG+AD + + P    VFVED+ EE+   ++    GL NLGNTCYMN+T+QC+ SVPELK AL +Y+ + R++    S+  +T A  +LF+ +DK+   + P+     L   +PQF +    G ++QQDA ECW Q++  L Q L ++    + +
Sbjct:   66 GMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKE 225          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP14_HUMAN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 2.605e-30
Identity = 63/160 (39.38%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPD 477
            G  L+MMG+AD + + P    VFVED+ EE+   ++    GL NLGNTCYMN+T+QC+ SVPELK AL +Y+ + R++    S+  +T A  +LF+ +DK+   + P+     L   +PQF +    G ++QQDA ECW Q++  L Q L ++    + +
Sbjct:   66 GMTLLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKE 225          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP14_RABIT (Ubiquitin carboxyl-terminal hydrolase 14 OS=Oryctolagus cuniculus GN=USP14 PE=1 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 4.443e-30
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPD 477
            G  ++MMG+AD + + P    VFVED+ EE+   ++    GL NLGNTCYMN+T+QC+ SVPELK AL +Y+ + R++    S+  +T A  +LF+ +DK+   + P+     L   +PQF +    G ++QQDA ECW Q++  L Q L ++    + +
Sbjct:   66 GMTILMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAIEDDSVKE 225          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP14_BOVIN (Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos taurus GN=USP14 PE=2 SV=3)

HSP 1 Score: 130.568 bits (327), Expect = 5.803e-30
Identity = 62/160 (38.75%), Postives = 97/160 (60.62%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSVNASEIPD 477
            G  ++MMG+AD + + P    VFVED+ EE+   ++    GL NLGNTCYMN+T+QC+ SVPELK AL +Y+ + R++    S+  +T A  +LF+ +DK+   + P+     L   +PQF +    G ++QQDA ECW Q++  L Q L ++    + +
Sbjct:   66 GMTVLMMGSADALPEEPSAKTVFVEDMTEEQLASAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWVQMMRVLQQKLEAIEDDTVKE 225          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP14_MOUSE (Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus musculus GN=Usp14 PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 7.579e-30
Identity = 62/153 (40.52%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    1 GQRLMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL-HNGTFMQQDAEECWTQLLYTLSQSLRSV 456
            G  ++MMG+AD + + P    VFVED+ EE+   ++    GL NLGNTCYMN+T+QC+ SVPELK AL +Y+ + R++    S+  +T A  +LF+ +DK+   + P+     L   +PQF +    G ++QQDA ECW Q++  L Q L ++
Sbjct:   66 GMTVLMMGSADALPEEPSAKTVFVEDMTEEQLATAMELPCGLTNLGNTCYMNATVQCIRSVPELKDALKRYAGALRASGEMASAQYITAALRDLFDSMDKTSSSIPPIILLQFLHMAFPQFAEKGEQGQYLQQDANECWIQMMRVLQQKLEAI 218          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP6_SCHPO (Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizosaccharomyces pombe GN=ubp6 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.871e-23
Identity = 63/150 (42.00%), Postives = 87/150 (58.00%), Query Frame = 1
Query:   10 LMMMGTADEIVKAPEKGPVFVEDLPEEEQVLSLGHSAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQSGRSNDVDQSSHMLTVATSELFNDLDKSVKPVAPMQFWMLLRKKYPQFGQL--HNGTFMQQDAEECWTQLLYTLSQSLRS 453
            L+MMGTA E+   P   P+   +  E+E+    G+ +GL NLGNTCYMNST+Q L ++PEL  A+ +++ SG           L      L N + +S  PV PM+F   LR +YPQF ++    G + QQDAEECW+ LL  L +SL S
Sbjct:   67 LLMMGTAGEL---PTAMPIPAVESVEQEESEDDGYPSGLINLGNTCYMNSTVQMLRAIPELSDAVSQFNSSGG----------LVAEYRTLLNSM-QSNAPVTPMRFLQSLRMEYPQFAEMSRETGGYAQQDAEECWSFLLSVLQRSLSS 202          
BLAST of CX290950 vs. ExPASy Swiss-Prot
Match: UBP6_YEAST (Ubiquitin carboxyl-terminal hydrolase 6 OS=Saccharomyces cerevisiae GN=UBP6 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.019e-19
Identity = 57/155 (36.77%), Postives = 86/155 (55.48%), Query Frame = 1
Query:    1 GQRLMMMGTAD-EIVKAPEKGPVFVEDLPEEEQVLSLGH-SAGLFNLGNTCYMNSTIQCLHSVPELKSALIKYSQS---GRSNDVDQSSH-MLTVATSELFNDL-DKSVKPVAPMQFWMLLRKKYPQFGQ--LHNGTFMQQDAEECWTQLLYTLS 438
            G  +M++GT D  ++  P K   F+EDL  E+QV        G  N+GNTCY+N+T+Q L+ V +L+  ++ Y+ S     S   D+  H  + +     F +L +KS K V P+     LRK YPQF +     G + QQDAEE +TQL +++S
Sbjct:   68 GSTVMLLGTPDANLISKPAKKNNFIEDLAPEQQVQQFAQLPVGFKNMGNTCYLNATLQALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPIVLLNTLRKCYPQFAERDSQGGFYKQQDAEELFTQLFHSMS 222          
The following BLAST results are available for this feature:
BLAST of CX290950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
UBP7_ARATH1.562e-6767.35Ubiquitin carboxyl-terminal hydrolase 7 OS=Arabido... [more]
UBP6_ARATH9.477e-6564.80Ubiquitin carboxyl-terminal hydrolase 6 OS=Arabido... [more]
UBP14_PANTR2.605e-3039.38Ubiquitin carboxyl-terminal hydrolase 14 OS=Pan tr... [more]
UBP14_HUMAN2.605e-3039.38Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo s... [more]
UBP14_RABIT4.443e-3038.75Ubiquitin carboxyl-terminal hydrolase 14 OS=Orycto... [more]
UBP14_BOVIN5.803e-3038.75Ubiquitin carboxyl-terminal hydrolase 14 OS=Bos ta... [more]
UBP14_MOUSE7.579e-3040.52Ubiquitin carboxyl-terminal hydrolase 14 OS=Mus mu... [more]
UBP6_SCHPO6.871e-2342.00Ubiquitin carboxyl-terminal hydrolase 6 OS=Schizos... [more]
UBP6_YEAST6.019e-1936.77Ubiquitin carboxyl-terminal hydrolase 6 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionC03002B06Rv OF1 Citrus clementina cDNA clone C03002B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290950 ID=CX290950; Name=CX290950; organism=Citrus clementina; type=EST; length=590bp
GGTCAAAGATTGATGATGATGGGAACAGCAGATGAGATTGTGAAGGCTCC
TGAGAAGGGACCTGTTTTTGTGGAAGATCTTCCTGAAGAAGAACAAGTGT
TATCACTGGGTCATAGTGCTGGCCTGTTCAATTTGGGAAACACCTGCTAC
ATGAACTCCACCATCCAGTGCCTGCATTCTGTTCCAGAGTTGAAGTCTGC
TTTAATTAAGTATTCACAGTCTGGAAGAAGCAATGATGTGGATCAAAGCT
CTCATATGTTGACAGTTGCTACTTCTGAATTATTTAATGATCTTGATAAA
AGTGTGAAGCCTGTGGCTCCTATGCAGTTTTGGATGCTGTTGCGTAAAAA
GTATCCTCAGTTTGGCCAGTTGCACAATGGTACCTTCATGCAGCAGGATG
CTGAAGAGTGTTGGACACAGCTTTTGTATACGCTTTCACAGTCTCTAAGA
TCAGTAAATGCTAGTGAAATTCCCGATCAGTGAAAGCCCTTTTCGGTATT
GATATTGNGAGCAGAGTGCATTGCCAAGAAAGTGGTGAGGAAAGCTCGGA
AACNGAATCAATTTATGCTCTTTAAATGTCACATATCACA
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