CX290952

Overview
NameCX290952
Unique NameCX290952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length647
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig334 contig Ccv1_Contig334:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290952 vs. ExPASy Swiss-Prot
Match: AASS_ARATH (Alpha-aminoadipic semialdehyde synthase OS=Arabidopsis thaliana GN=LKR/SDH PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.219e-74
Identity = 131/176 (74.43%), Postives = 156/176 (88.64%), Query Frame = 1
Query:  118 LGNGVVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIGGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLKSWIFNAFSFXGGHRIWNS 645
            LGNGVVGIL+E+VNKWERR PLTPSHCARLLH G+D++G++RIVVQPS KRIHHD LYEDVGC+IS+DLS+CGL+LGIKQP+LEMILP++AYAFFSHTHKAQ+ENMPLLDKIL+ERV+L DYELI GD+G+RLLAFGK+AGRAG++DFLHGLGQR L       F   G   +++S
Sbjct:   12 LGNGVVGILAETVNKWERRTPLTPSHCARLLHGGKDRTGISRIVVQPSAKRIHHDALYEDVGCEISDDLSDCGLILGIKQPELEMILPERAYAFFSHTHKAQKENMPLLDKILSERVTLCDYELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRKLILGYSTPFLSLGASYMYSS 187          
BLAST of CX290952 vs. ExPASy Swiss-Prot
Match: AASS_BOVIN (Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Bos taurus GN=AASS PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.507e-32
Identity = 76/173 (43.93%), Postives = 103/173 (59.54%), Query Frame = 1
Query:  130 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIGGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLKSWIFNAFSFXG-GHRIWNS 645
            V+ +  E VN WERRAPL P H   + + G       ++++QPS +R  HD  Y   G  + ED+SE  L+LG+K+P  E ++P K YAFFSHT KAQ  NM LLD+IL + + L DYE +    G R++AFG++AG AG+I+ LHG+G R L       F   G  H   NS
Sbjct:   25 VMALRREDVNAWERRAPLAPRHVKGITNLGY------KVLIQPSNRRAIHDKEYVKAGGILQEDISEACLILGVKRPPEEKLMPKKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEKMVDHRGIRVVAFGQWAGVAGIINILHGMGLRLLALGHHTPFMHIGMAHNYRNS 191          
BLAST of CX290952 vs. ExPASy Swiss-Prot
Match: AASS_HUMAN (Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Homo sapiens GN=AASS PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.386e-32
Identity = 76/173 (43.93%), Postives = 102/173 (58.96%), Query Frame = 1
Query:  130 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIGGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLKSWIFNAFSFXG-GHRIWNS 645
            V+ +  E VN WERRAPL P H   + + G       ++++QPS +R  HD  Y   G  + ED+SE  L+LG+K+P  E ++  K YAFFSHT KAQ  NM LLD+IL + + L DYE +    G R++AFG++AG AGMI+ LHG+G R L       F   G  H   NS
Sbjct:   25 VLAVRREDVNAWERRAPLAPKHIKGITNLGY------KVLIQPSNRRAIHDKDYVKAGGILQEDISEACLILGVKRPPEEKLMSRKTYAFFSHTIKAQEANMGLLDEILKQEIRLIDYEKMVDHRGVRVVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHIGMAHNYRNS 191          
BLAST of CX290952 vs. ExPASy Swiss-Prot
Match: AASS_MOUSE (Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Mus musculus GN=Aass PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.771e-32
Identity = 74/173 (42.77%), Postives = 101/173 (58.38%), Query Frame = 1
Query:  130 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIGGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLKSWIFNAFSFXG-GHRIWNS 645
            V+ +  E VN WERRAPL P H   +   G       ++++QPS +R  HD  Y   G  + ED++E  L+LG+K+P  E ++  K YAFFSHT KAQ  NM LLD++L + + L DYE +    G R++AFG++AG AGMI+ LHG+G R L       F   G  H   NS
Sbjct:   25 VMALRREDVNAWERRAPLAPKHIKGITKLGY------KVLIQPSNRRAIHDKEYVRAGGILQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMNLLDEVLKQEIRLIDYEKMVDHRGSRIVAFGQWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNS 191          
BLAST of CX290952 vs. ExPASy Swiss-Prot
Match: AASS_RAT (Alpha-aminoadipic semialdehyde synthase, mitochondrial OS=Rattus norvegicus GN=Aass PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.276e-31
Identity = 74/173 (42.77%), Postives = 100/173 (57.80%), Query Frame = 1
Query:  130 VVGILSESVNKWERRAPLTPSHCARLLHSGRDKSGVARIVVQPSTKRIHHDVLYEDVGCQISEDLSECGLVLGIKQPKLEMILPDKAYAFFSHTHKAQRENMPLLDKILAERVSLYDYELIGGDNGRRLLAFGKFAGRAGMIDFLHGLGQRYLKSWIFNAFSFXG-GHRIWNS 645
            V+ +  E VN WERRAPL P H   +   G       ++++QPS +R  HD  Y   G  + ED++E  L+LG+K+P  E ++  K YAFFSHT KAQ  NM LLD++L + + L DYE +    G R++AFG +AG AGMI+ LHG+G R L       F   G  H   NS
Sbjct:   25 VMALRREDVNAWERRAPLAPKHIKGITKLGY------KVLIQPSNRRAIHDKEYVRAGGILQEDITEACLILGVKRPPEEKLMSKKTYAFFSHTIKAQEANMSLLDEVLKQEIRLIDYEKMVDHRGSRIVAFGHWAGVAGMINILHGMGLRLLALGHHTPFMHLGMAHNYRNS 191          
The following BLAST results are available for this feature:
BLAST of CX290952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AASS_ARATH1.219e-7474.43Alpha-aminoadipic semialdehyde synthase OS=Arabido... [more]
AASS_BOVIN1.507e-3243.93Alpha-aminoadipic semialdehyde synthase, mitochond... [more]
AASS_HUMAN4.386e-3243.93Alpha-aminoadipic semialdehyde synthase, mitochond... [more]
AASS_MOUSE9.771e-3242.77Alpha-aminoadipic semialdehyde synthase, mitochond... [more]
AASS_RAT1.276e-3142.77Alpha-aminoadipic semialdehyde synthase, mitochond... [more]
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Properties
Property NameValue
Genbank descriptionC03002B08Rv OF1 Citrus clementina cDNA clone C03002B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290952 ID=CX290952; Name=CX290952; organism=Citrus clementina; type=EST; length=647bp
TTTCAGTTTAGTTTATTACACGATAATACGAAGTTGCATGCAAGAATCGT
CGTTTATTCCTCGAATTACCAGCACATATATACCCACCAAAGCCTGTGAA
GGTACACAATGCCCATGCTGGGGAATGGAGTTGTTGGAATCCTCTCCGAG
TCTGTGAATAAGTGGGAAAGAAGGGCCCCTTTAACTCCGTCACACTGTGC
TCGGCTTCTGCATAGTGGCCGGGATAAATCTGGAGTGGCTCGCATAGTTG
TGCAGCCATCAACAAAGCGCATCCATCATGATGTGCTATATGAGGACGTT
GGATGTCAAATTTCGGAAGATTTGTCTGAATGCGGTCTTGTTTTGGGTAT
TAAACAACCAAAGTTGGAGATGATACTACCTGATAAAGCTTATGCATTTT
TTTCACATACCCACAAAGCTCAGAGAGAAAACATGCCTTTGTTGGATAAG
ATTTTAGCAGAGAGGGTCTCTCTGTATGACTATGAGCTTATTGGTGGGGA
CAATGGGAGAAGGCTACTTGCTTTTGGTAAATTTGCTGGTAGAGCTGGAA
TGATTGACTTCTTACACGGATTAGGACAACGGTATTTAAAGTCTTGGATA
TTCAACGCCTTTTCTTTTNCTGGGGGGCATCGGATATGGAATTCCTC
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