CX290954

Overview
NameCX290954
Unique NameCX290954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length633
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12289 contig Ccv1_Contig12289:80..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 4.561e-71
Identity = 125/174 (71.84%), Postives = 140/174 (80.46%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSG+DLRSKARTLP P +DP+KLPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR NAAK+F HPDVVAEEPWYGIEQEYTLLQKD+NWPL                   ADKAF  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCGAGADKAFGRD-IVDAHYKACLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA1_MEDSA (Glutamine synthetase cytosolic isozyme OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 8.601e-70
Identity = 125/174 (71.84%), Postives = 138/174 (79.31%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSG+DLRSKARTLP P TDP++LPKWNYDGSST QAPG+DSEVI+YPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F HPDVVAE PWYGIEQEYTLLQKDINWPL                   ADKAF  +  V+S+YKAC    + ISG
Sbjct:   16 TEKIIAEYIWIGGSGLDLRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSHPDVVAEVPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGAGADKAFGRD-IVDSHYKACLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 3.268e-69
Identity = 121/174 (69.54%), Postives = 138/174 (79.31%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+W+GGSGMDLRSKARTLP P  DP KLPKWNYDGSST+QAPGDDSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR++AAK+F HPDVVAE PWYGIEQEYTLLQKD+NWPL                   ADKA+  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWVGGSGMDLRSKARTLPGPVDDPAKLPKWNYDGSSTDQAPGDDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYDAAKIFSHPDVVAEVPWYGIEQEYTLLQKDVNWPLGWPLGGYPGPQGPYYCGVGADKAYGRD-IVDAHYKACVYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA3_PEA (Glutamine synthetase root isozyme A OS=Pisum sativum GN=GS3A PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 7.281e-69
Identity = 120/174 (68.97%), Postives = 137/174 (78.74%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSSTNQAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA+  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTNQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRD-IVDAHYKACLFAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA4_PEA (Glutamine synthetase root isozyme B OS=Pisum sativum GN=GS3B PE=3 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.767e-68
Identity = 119/174 (68.39%), Postives = 137/174 (78.74%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+W+GGSG+D+RSKARTLP P +DP KLPKWNYDGSST+QAPG DSEVILYPQ +FKDPFRRGNNILV+CD YTPAGEP+PTNKR+NAAK+F HPDV AE PWYGIEQEYTLLQKDINWPL                   ADKA+  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWVGGSGIDIRSKARTLPGPVSDPAKLPKWNYDGSSTDQAPGKDSEVILYPQAIFKDPFRRGNNILVICDVYTPAGEPLPTNKRYNAAKIFSHPDVAAEVPWYGIEQEYTLLQKDINWPLGWPIGGYPGKQGPYYCGIGADKAYGRD-IVDAHYKACLFAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 2.767e-68
Identity = 121/174 (69.54%), Postives = 137/174 (78.74%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSGMDLRSKARTLP P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR++AAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+F  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLPGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYSAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRD-IVDAHYKACLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.614e-68
Identity = 125/174 (71.84%), Postives = 136/174 (78.16%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCDAYTPAGEPIPTNKR  AAK+F +PDVVAEEPWYGIEQEYTLLQ+DINWPL                   ADKAF  +  V+S+YKA     + ISG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPAKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHAAAKIFSNPDVVAEEPWYGIEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRD-IVDSHYKAYLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLN11_ORYSJ (Glutamine synthetase cytosolic isozyme 1-1 OS=Oryza sativa subsp. japonica GN=GLN1-1 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 3.614e-68
Identity = 122/174 (70.11%), Postives = 136/174 (78.16%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFR+GNNILVMCD YTPAGEPIPTNKR NAAK+F  P+V +EEPWYGIEQEYTLLQKDINWPL                   ADK+F  +  V+S+YKAC    + ISG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRD-IVDSHYKACLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 121/174 (69.54%), Postives = 136/174 (78.16%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            TEK+IAEY+WIGGSGMDLRSKARTL  P TDP+KLPKWNYDGSST QAPG+DSEVILYPQ +FKDPFRRGNNILVMCD YTPAGEPIPTNKR+NAAK+F  P+V AEEPWYGIEQEYTLLQKD NWPL                   A+K+F  +  V+++YKAC    + ISG
Sbjct:   16 TEKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDCYTPAGEPIPTNKRYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRD-IVDAHYKACLYAGINISG 188
[Close]
BLAST of CX290954 vs. ExPASy Swiss-Prot
Match: GLNA2_SOYBN (Glutamine synthetase cytosolic isozyme 2 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.164e-68
Identity = 121/174 (69.54%), Postives = 136/174 (78.16%), Query Frame = 2 
Query:  107 TEKVIAEYVWIGGSGMDLRSKARTLPAPTTDPTKLPKWNYDGSSTNQAPGDDSEVILYPQTVFKDPFRRGNNILVMCDAYTPAGEPIPTNKRFNAAKVFGHPDVVAEEPWYGIEQEYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKAFRPETFVNSYYKACFTLELTISG 628
            T+KVIAEY+W+GGSGMD+RSKARTL  P  DP+KLPKWNYDGSST QAPG DSEVILYPQ +FKDPFRRG+NILVMCDAYTPAGEPIPTNKR NAAK+FGHPDV AEEPWYG+EQEYTLLQKD+ WPL                   A+KAF  +  V+S+YKAC    + ISG
Sbjct:   16 TDKVIAEYIWVGGSGMDMRSKARTLSGPVKDPSKLPKWNYDGSSTGQAPGQDSEVILYPQAIFKDPFRRGSNILVMCDAYTPAGEPIPTNKRNNAAKIFGHPDVAAEEPWYGLEQEYTLLQKDVQWPLGWPLGGFPGPQGPYYCGTGANKAFGRD-IVDSHYKACIYAGINISG 188
The following BLAST results are available for this feature:
BLAST of CX290954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
GLNA_VIGAC4.561e-7171.84Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA1_MEDSA8.601e-7071.84Glutamine synthetase cytosolic isozyme OS=Medicago... [more]
GLNA2_PHAVU3.268e-6969.54Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA3_PEA7.281e-6968.97Glutamine synthetase root isozyme A OS=Pisum sativ... [more]
GLNA4_PEA2.767e-6868.39Glutamine synthetase root isozyme B OS=Pisum sativ... [more]
GLNA4_MAIZE2.767e-6869.54Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLNA_NICPL3.614e-6871.84Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLN11_ORYSJ3.614e-6870.11Glutamine synthetase cytosolic isozyme 1-1 OS=Oryz... [more]
GLNA3_MAIZE6.164e-6869.54Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA2_SOYBN6.164e-6869.54Glutamine synthetase cytosolic isozyme 2 OS=Glycin... [more]

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Properties
Property NameValue
Genbank descriptionC03002B10Rv OF1 Citrus clementina cDNA clone C03002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290954 ID=CX290954; Name=CX290954; organism=Citrus clementina; type=EST; length=633bp
CTCACTCATTTTTTATTTTCATTTTCGTTTCAAAACAAACAAAGCTGCAA
GCTAGGCAGCCATGTCTCTTCTCAACGATCTCCTCAACCTTAATCTCTCT
GAATCCACCGAAAAAGTCATCGCCGAATACGTATGGATAGGCGGATCTGG
TATGGATTTGAGAAGCAAAGCCAGAACTTTGCCAGCTCCAACAACGGACC
CTACCAAGCTACCGAAATGGAATTACGATGGCTCCAGCACTAACCAAGCC
CCTGGTGATGACAGTGAAGTTATTTTGTACCCGCAAACGGTGTTTAAGGA
TCCTTTCAGAAGAGGGAACAATATCCTGGTAATGTGCGATGCGTACACTC
CAGCCGGCGAGCCCATCCCAACAAACAAAAGATTCAATGCCGCCAAAGTT
TTCGGCCACCCCGATGTTGTCGCCGAAGAGCCATGGTATGGCATTGAGCA
GGAGTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGGGGTGGCCAG
TTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGTGTTGGCGCT
GATAAGGCTTTTAGGCCCGAGACATTTGTGAATTCTTACTACAAAGCTTG
CTTTACGCTGGAATTAACAATCAGTGGGCATTT
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