CX290956

Overview
NameCX290956
Unique NameCX290956
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length626
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13571 contig Ccv1_Contig13571:561..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.429e-63
Identity = 129/201 (64.18%), Postives = 141/201 (70.15%), Query Frame = 1
Query:   10 NSFSSGRVVKRERDLXXXXXXXXXXXXXRASD--EDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGG----------------IADGN-SKGPFPMGTKPHXYSPFTNP 555
            +SFSSGRVVKRERD                SD  EDE+G++ARKKLRLTK+QSALLEESFK HSTLNPKQKQ LARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETL DEN RL              P YMHMPA+TLT CPSCERIGGG                I DG+ +KG F + +KPH ++PFTNP
Sbjct:   70 SSFSSGRVVKRERDGGEESPEEEEMTERVISDYHEDEEGISARKKLRLTKQQSALLEESFKDHSTLNPKQKQVLARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLADENIRLQKEIQELKTLKLTQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNP 270          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.702e-62
Identity = 129/198 (65.15%), Postives = 143/198 (72.22%), Query Frame = 1
Query:   10 NSFSSGRVVKRERDLXXXXXXXXXXXXX------RASDE--DEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIADGN--------SKGPFPMGTKPHXYSPFTNP 555
            +SFSSGRV KRER++                   R SD+  DE+GV+ARKKLRLTK+QSALLE++FK HSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRL              P YMHMPAATLTMCPSCER+GGG   G+        +KG F + TKP  Y+PFTNP
Sbjct:   78 SSFSSGRV-KREREISGGDGEEEAEETTERVVCSRVSDDHDDEEGVSARKKLRLTKQQSALLEDNFKLHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQDLKALKLSQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNP 274          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.765e-51
Identity = 98/138 (71.01%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   94 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIADGNSKGP 507
            RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH             P YMH+PA TL+MCPSCER+    A  ++  P
Sbjct:  162 RASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAP 298          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 202.216 bits (513), Expect = 1.765e-51
Identity = 98/138 (71.01%), Postives = 111/138 (80.43%), Query Frame = 1
Query:   94 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIADGNSKGP 507
            RASD+DE G +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRLH             P YMH+PA TL+MCPSCER+    A  ++  P
Sbjct:  162 RASDDDE-GASARKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVASNPATASTSAP 298          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.678e-50
Identity = 99/150 (66.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:   94 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHXYSP 543
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MCPSCER+    A   +       T     +P
Sbjct:  165 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAP 313          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 5.678e-50
Identity = 99/150 (66.00%), Postives = 111/150 (74.00%), Query Frame = 1
Query:   94 RASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHXYSP 543
            RASDED DG +ARKKLRL+KEQSA LEESFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCETLT+ENRRL              P YMH+PA TL+MCPSCER+    A   +       T     +P
Sbjct:   78 RASDED-DGGSARKKLRLSKEQSAFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAP 226          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.116e-48
Identity = 103/173 (59.54%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  103 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHXYSPFTN 552
            D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+
Sbjct:  118 DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH 288          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.116e-48
Identity = 103/173 (59.54%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  103 DEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLH----------------XXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHXYSPFTN 552
            D+D+DG + RKKLRLTKEQSALLE+ F++HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLK+CCETLT+ENRRL                              P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+
Sbjct:  118 DDDDDG-STRKKLRLTKEQSALLEDRFREHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH 288          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.002e-46
Identity = 92/133 (69.17%), Postives = 104/133 (78.20%), Query Frame = 1
Query:   94 RASDEDEDGVNA--RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHMPAATLTMCPSCERIGGGIA 486
            RAS+ED D  N   RKKLRL+K+QSA LE+SFK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE+LK+CCE+LT+ENRRL              P YM +PA TLTMCPSCER+    A
Sbjct:  175 RASNEDNDDENGSTRKKLRLSKDQSAFLEDSFKEHSTLNPKQKIALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVKELRTLKTSTPFYMQLPATTLTMCPSCERVATSAA 307          
BLAST of CX290956 vs. ExPASy Swiss-Prot
Match: HOX15_ORYSJ (Homeobox-leucine zipper protein HOX15 OS=Oryza sativa subsp. japonica GN=HOX15 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 6.496e-46
Identity = 97/160 (60.62%), Postives = 112/160 (70.00%), Query Frame = 1
Query:   97 ASDEDEDGVNARKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHXXXXXXXXXXXXXPLYMHM------PAATLTMCPSCERIGGGIADGNSKGPFP----MGTKPHXYSPF 546
            A+ +D++G N+RKKLRL+KEQSALLE+ FK+HSTLNPKQK ALA+QLNLRPRQVEVWFQNRRARTKLKQTEVDCE LK+CCETLT+ENRRLH                  M      PAATL++CPSCER+    A G S           T PH +SPF
Sbjct:   82 AAADDDEGCNSRKKLRLSKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLRALTHSTAAGFFMATTLPVPAATLSICPSCERLATAAAAGASPTAAADRTNKPTAPHLFSPF 241          
The following BLAST results are available for this feature:
BLAST of CX290956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
HAT9_ARATH3.429e-6364.18Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HAT22_ARATH1.702e-6265.15Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HOX27_ORYSJ1.765e-5171.01Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI1.765e-5171.01Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ5.678e-5066.00Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI5.678e-5066.00Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX19_ORYSJ3.116e-4859.54Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI3.116e-4859.54Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HAT14_ARATH1.002e-4669.17Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HOX15_ORYSJ6.496e-4660.63Homeobox-leucine zipper protein HOX15 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC03002B12Rv OF1 Citrus clementina cDNA clone C03002B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290956 ID=CX290956; Name=CX290956; organism=Citrus clementina; type=EST; length=626bp
GCTGTTTCTAATTCCTTCTCTAGCGGTAGAGTCGTCAAGAGGGAGAGAGA
CCTTAGCAGTGAAGAGATAGAGGTTGAAAAAGTTATTTCCTCAAGAGCCA
GTGATGAAGATGAAGACGGTGTTAATGCCAGAAAGAAACTTAGGCTCACC
AAAGAACAATCTGCTCTTCTTGAGGAAAGCTTCAAACAGCATAGCACTCT
CAATCCGAAGCAAAAGCAAGCTTTGGCAAGGCAACTAAACCTACGGCCAA
GACAAGTTGAAGTATGGTTCCAGAATAGGAGAGCCAGGACAAAGCTCAAG
CAAACAGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAAC
TGATGAAAACAGAAGGCTGCATAAGGAGCTACAAGAACTCAAAGCTCTGA
AGCTAGCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATG
TGCCCTTCTTGTGAACGGATCGGCGGCGGCATCGCCGATGGAAACTCGAA
GGGCCCGTTTCCCATGGGTACTAAGCCTCACTGNTATAGTCCCTTCACCA
ATCCTTTCAGCAGCTTGGTGATTGAGTTTGTTAGATAGGATTAGGAAAAG
AAAATCAGATTAAATTAAATTATAAA
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