CX290958

Overview
NameCX290958
Unique NameCX290958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX290958_ssr80 microsatellite CX290958_ssr80:80..94. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig7227 contig Ccv1_Contig7227:197..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: CCS_CITSI (Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 5.432e-107
Identity = 155/165 (93.94%), Postives = 155/165 (93.94%), Query Frame = 1
Query:    1 QIIDSTXXXXXXXXXXGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            QIIDST          GRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC
Sbjct:   18 QIIDSTSSPSFSLFPLGRQNACSRKADHHHHHRIRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 182          

HSP 2 Score: 75.485 bits (184), Expect = 5.432e-107
Identity = 39/55 (70.91%), Postives = 40/55 (72.73%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WLC**FLVSMIKPRNHGY 673
            +KFHKAKVWHVNHQEFESSIVCDDGNE  ASLI         F V   KPRNHGY
Sbjct:  187 VKFHKAKVWHVNHQEFESSIVCDDGNEIKASLIVDASGFASSF-VEYDKPRNHGY 240          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: NXS_SOLTU (Neoxanthin synthase, chloroplastic OS=Solanum tuberosum GN=NXS PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.212e-58
Identity = 93/148 (62.84%), Postives = 109/148 (73.65%), Query Frame = 1
Query:   58 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHP-SDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            N  ++K     H R  +SK F +FL+L P S PE  D ++    P S R ++DVIIIG GPAGLRLAE VS ++ +KVCCVDPSPLS WPNNYGVWVDEFE++GL DCLD  WPMTCV INDHKTKYL RPYGRVSR  LK +LL +C
Sbjct:   31 NPTTKKKSRKCHFRNESSKLFCSFLDLAPISKPESFDVNISLVDPNSGRAQFDVIIIGAGPAGLRLAEHVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFENLGLEDCLDHKWPMTCVHINDHKTKYLGRPYGRVSRKKLKLRLLNSC 177          

HSP 2 Score: 60.077 bits (144), Expect = 1.212e-58
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WLC**FLVSMIKPRNHGY 673
            +KF+KAKVW V H+EFESSIVCDDG +   SL+         F +   KPRNHGY
Sbjct:  182 VKFYKAKVWKVEHEEFESSIVCDDGKKIRGSLVVDASGFASDF-IEYDKPRNHGY 235          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: CCS_CAPAN (Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 3.502e-58
Identity = 93/148 (62.84%), Postives = 110/148 (74.32%), Query Frame = 1
Query:   58 NACSRKADHHHHHRIRTSK-FGNFLELTPESVPEFLDFDLPWFHPS-DRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            N   +K     H+R ++S  F +FL+L P S PE LD ++ W     D   +DVIIIGTGPAGLRLAEQVS ++ +KVCCVDPSPLS WPNNYGVWVDEFE +GL DCLD  WP++CV I+DHKTKYLDRPYGRVSR  LK KLL +C
Sbjct:   31 NPTKQKDSRKFHYRNKSSTHFCSFLDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVS-KYGIKVCCVDPSPLSMWPNNYGVWVDEFEKLGLEDCLDHKWPVSCVHISDHKTKYLDRPYGRVSRKKLKLKLLNSC 177          

HSP 2 Score: 55.0694 bits (131), Expect = 3.502e-58
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WLC**FLVSMIKPRNHGY 673
            +KF+KAKV  V H+EFESSIVCDDG +   SLI         F +   KPRNHGY
Sbjct:  182 VKFYKAKVLKVKHEEFESSIVCDDGRKISGSLIVDASGYASDF-IEYDKPRNHGY 235          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYB_CAPAN (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.655e-38
Identity = 66/123 (53.66%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  127 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+I+D  TK L+RPYGRV+R  LK+K+++ C
Sbjct:   56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDKTTKDLNRPYGRVNRKQLKSKMMQKC 177          

HSP 2 Score: 35.4242 bits (80), Expect = 1.655e-38
Identity = 21/55 (38.18%), Postives = 31/55 (56.36%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WLC**FLVSMIKPRNHGY 673
            +KFH+AKV  V H+E +S ++C+DG    A+++          LV   KP N GY
Sbjct:  182 VKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFS-RSLVQYDKPYNPGY 235          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYB_TOBAC (Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.156e-38
Identity = 69/129 (53.49%), Postives = 91/129 (70.54%), Query Frame = 1
Query:  109 SKFGNFLELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            +K    LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + V  +DPSP   WPNNYGVWVDEFE + L+DCLD TW  T V+I+D+ TK LDRPYGRV+R  LK+K+++ C
Sbjct:   52 AKSSALLELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEA-GLSVVSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGTVVYIDDNTTKDLDRPYGRVNRKQLKSKMMQKC 179          

HSP 2 Score: 33.113 bits (74), Expect = 2.156e-38
Identity = 14/33 (42.42%), Postives = 23/33 (69.70%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLI 607
            +KFH AKV  V H+E +S ++C+DG    A+++
Sbjct:  184 VKFHHAKVIKVIHEEAKSMLICNDGVTIQATVV 216          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYB_SOLLC (Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.211e-38
Identity = 65/123 (52.85%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  127 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            LEL PE+  E LDF+LP + PS  +  D+ ++G GPAGL +A+QVS    + VC +DP+P   WPNNYGVWVDEFE + L+DCLD TW    V+I+D+  K L RPYGRV+R  LK+K+++ C
Sbjct:   58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEA-GLSVCSIDPNPKLIWPNNYGVWVDEFEAMDLLDCLDATWSGAAVYIDDNTAKDLHRPYGRVNRKQLKSKMMQKC 179          

HSP 2 Score: 35.4242 bits (80), Expect = 6.211e-38
Identity = 21/55 (38.18%), Postives = 31/55 (56.36%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WLC**FLVSMIKPRNHGY 673
            +KFH+AKV  V H+E +S ++C+DG    A+++          LV   KP N GY
Sbjct:  184 VKFHQAKVIKVIHEESKSMLICNDGITIQATVVLDATGFS-RSLVQYDKPYNPGY 237          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYB_ARATH (Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.932e-36
Identity = 64/123 (52.03%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  127 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            L+L PE+  E LDF+LP +  S     D+ I+G GPAGL +A+QVS    + VC +DPSP   WPNNYGVWVDEFE + L+DCLD TW    V++++   K L RPYGRV+R  LK+K+L+ C
Sbjct:   57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEA-GLSVCSIDPSPKLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVYVDEGVKKDLSRPYGRVNRKQLKSKMLQKC 178          

HSP 2 Score: 38.5058 bits (88), Expect = 1.932e-36
Identity = 23/57 (40.35%), Postives = 33/57 (57.89%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WL--C**FLVSMIKPRNHGY 673
            +KFH++KV +V H+E  S++VC DG +  AS++        C   LV   KP N GY
Sbjct:  183 VKFHQSKVTNVVHEEANSTVVCSDGVKIQASVVLDATGFSRC---LVQYDKPYNPGY 236          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYB_NARPS (Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.778e-31
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 1
Query:  127 LELTPESVPEFLDFDLPWFHPSDRIRYDVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            L+L PE   E L+FDLP + PS  +  D+ ++G GP     +  +     + V  +DP+P   WPNNYGVWVDEFED+ L+DCLD TW    V+++D  TK L RPY RV+R  LK+K+++ C
Sbjct:   62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLGG--GLSVVSIDPNPKLIWPNNYGVWVDEFEDMDLLDCLDATWSGAIVYVDDRSTKNLSRPYARVNRKNLKSKMMKKC 182          

HSP 2 Score: 29.261 bits (64), Expect = 4.778e-31
Identity = 19/57 (33.33%), Postives = 28/57 (49.12%), Query Frame = 2
Query:  509 LKFHKAKVWHVNHQEFESSIVCDDGNENXASLIXGC*WL--C**FLVSMIKPRNHGY 673
            ++FH+A V    H+E +S ++C DG    A ++        C   LV   KP N GY
Sbjct:  187 VRFHQATVVKAMHEEEKSYLICSDGVTIDARVVLDATGFSRC---LVQYDKPYNPGY 240          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYE_ARATH (Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 44/96 (45.83%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  208 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            D+++IG GPAGL LA + S++  +KV  + P    T  NNYGVW DEF D+GL  C++  W  T V+++D K   + R YGRVSR +L  +LL  C
Sbjct:  110 DLVVIGCGPAGLALAAE-SAKLGLKVGLIGPDLPFT--NNYGVWEDEFNDLGLQKCIEHVWRETIVYLDDDKPITIGRAYGRVSRRLLHEELLRRC 202          
BLAST of CX290958 vs. ExPASy Swiss-Prot
Match: LCYE_SOLLC (Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.072e-15
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 1
Query:  208 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLDKTWPMTCVFINDHKTKYLDRPYGRVSRNILKTKLLENC 495
            D+++IG GPAGL LA + S++  + V  V P    T  NNYGVW DEF+D+GL  C++  W  T V+++D +   + R YGRVSR+ L  +LL+ C
Sbjct:  107 DLVVIGCGPAGLALAAE-SAKLGLNVGLVGPDLPFT--NNYGVWEDEFKDLGLQACIEHVWRDTIVYLDDDEPILIGRAYGRVSRHFLHEELLKRC 199          
The following BLAST results are available for this feature:
BLAST of CX290958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
CCS_CITSI5.432e-10793.94Capsanthin/capsorubin synthase, chromoplast OS=Cit... [more]
NXS_SOLTU1.212e-5862.84Neoxanthin synthase, chloroplastic OS=Solanum tube... [more]
CCS_CAPAN3.502e-5862.84Capsanthin/capsorubin synthase, chromoplast OS=Cap... [more]
LCYB_CAPAN1.655e-3853.66Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYB_TOBAC2.156e-3853.49Lycopene beta cyclase, chloroplastic OS=Nicotiana ... [more]
LCYB_SOLLC6.211e-3852.85Lycopene beta cyclase, chloroplastic OS=Solanum ly... [more]
LCYB_ARATH1.932e-3652.03Lycopene beta cyclase, chloroplastic OS=Arabidopsi... [more]
LCYB_NARPS4.778e-3145.53Lycopene beta cyclase, chloroplastic/chromoplastic... [more]
LCYE_ARATH1.267e-1645.83Lycopene epsilon cyclase, chloroplastic OS=Arabido... [more]
LCYE_SOLLC1.072e-1544.79Lycopene epsilon cyclase, chloroplastic OS=Solanum... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03002C02Rv OF1 Citrus clementina cDNA clone C03002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290958 ID=CX290958; Name=CX290958; organism=Citrus clementina; type=EST; length=678bp
CAAATAATTGATTCAACATCATCACCTTCATTTTCCCTATTTCCATTAGG
CCGCCAAAATGCATGTTCAAGAAAGGCGGATCATCATCATCATCACAGGA
TCCGGACAAGCAAGTTTGGTAACTTCCTAGAGTTGACACCGGAGTCGGTA
CCTGAATTCTTAGACTTTGATCTCCCCTGGTTTCATCCGTCCGATCGTAT
TCGATATGACGTGATCATCATTGGCACTGGACCAGCCGGCCTCCGTCTAG
CTGAGCAAGTCTCATCGCGTCATAGTGTCAAGGTATGTTGTGTTGATCCT
TCACCTCTTTCTACGTGGCCTAACAACTATGGAGTTTGGGTTGATGAGTT
TGAAGACATAGGACTTGTAGACTGTTTGGACAAAACTTGGCCGATGACTT
GTGTTTTTATTAATGATCACAAGACCAAGTATCTAGACAGGCCCTACGGT
CGTGTTAGTAGAAATATTTTGAAGACAAAGTTATTAGAGAATTGTGTTTC
AAATGGAGTTAAAGTTTCATAAGGCTAAAGTTTGGCACGTGAATCATCAG
GAGTTCGAGTCTTCGATTGTTTGTGATGATGGGAATGAGAATAANGCTAG
CTTGATTGNTGGATGCTAGTGGCTTTGCTAGTAGTTTTTGGTGAGTATGA
TAAAGCCAAGAAACCATGGATACCCAAA
back to top