CX290969

Overview
NameCX290969
Unique NameCX290969
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length649
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:23..670. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_MAIZE (Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3 SV=1)

HSP 1 Score: 345.895 bits (886), Expect = 1.413e-99
Identity = 169/172 (98.26%), Postives = 169/172 (98.26%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 172

HSP 2 Score: 38.891 bits (89), Expect = 1.413e-99
Identity = 17/27 (62.96%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KEVS YLK  GYNP+K+ FVPI G
Sbjct:  169 EIVKEVSSYLKKVGYNPDKIHFVPISG 195
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A1_DAUCA (Elongation factor 1-alpha OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 2.634e-98
Identity = 166/172 (96.51%), Postives = 166/172 (96.51%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXK 577
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIID TTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETNKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDPTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK 172

HSP 2 Score: 40.4318 bits (93), Expect = 2.634e-98
Identity = 18/27 (66.67%), Postives = 21/27 (77.78%), Query Frame = 3 
Query:  567 KLXKEVSFYLKXGGYNPEKVPFVPIFG 647
            ++ KEVS YLK  GYNPEK+ FVPI G
Sbjct:  169 EIVKEVSSYLKKVGYNPEKIAFVPISG 195
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_ORYSJ (Elongation factor 1-alpha OS=Oryza sativa subsp. japonica GN=REFA1 PE=2 SV=2)

HSP 1 Score: 346.665 bits (888), Expect = 6.277e-95
Identity = 172/190 (90.53%), Postives = 175/190 (92.11%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_WHEAT (Elongation factor 1-alpha OS=Triticum aestivum GN=TEF1 PE=2 SV=1)

HSP 1 Score: 345.125 bits (884), Expect = 1.826e-94
Identity = 171/190 (90.00%), Postives = 175/190 (92.11%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA Y+EI K      ++    P + PF
Sbjct:    1 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKVPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_MANES (Elongation factor 1-alpha OS=Manihot esculenta GN=EF1 PE=3 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.385e-94
Identity = 171/190 (90.00%), Postives = 174/190 (91.58%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_TOBAC (Elongation factor 1-alpha OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.069e-94
Identity = 171/190 (90.00%), Postives = 174/190 (91.58%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_ARATH (Elongation factor 1-alpha OS=Arabidopsis thaliana GN=A1 PE=1 SV=1)

HSP 1 Score: 343.969 bits (881), Expect = 4.069e-94
Identity = 171/190 (90.00%), Postives = 174/190 (91.58%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_SOLLC (Elongation factor 1-alpha OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.184e-93
Identity = 170/190 (89.47%), Postives = 174/190 (91.58%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_SOYBN (Elongation factor 1-alpha OS=Glycine max GN=TEFS1 PE=3 SV=2)

HSP 1 Score: 341.658 bits (875), Expect = 2.019e-93
Identity = 169/190 (88.95%), Postives = 174/190 (91.58%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HI+IVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALL+FTLGVKQMICCCNKMDA TPKYSKA YDEI K      ++    P + PF
Sbjct:    1 MGKEKVHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLSFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPF 190
[Close]
BLAST of CX290969 vs. ExPASy Swiss-Prot
Match: EF1A_VICFA (Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 340.117 bits (871), Expect = 5.876e-93
Identity = 168/190 (88.42%), Postives = 173/190 (91.05%), Query Frame = 2 
Query:   62 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDAXTPKYSKAXYDEIXKGGLFLPEEXWIQPRESPF 631
            MGKEK HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET+KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA TPKYSK  Y+EI K      ++    P + PF
Sbjct:    1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETSKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYEEIVKEVSSYLKKVGYNPDKIPF 190
The following BLAST results are available for this feature:
BLAST of CX290969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_MAIZE1.413e-9998.26Elongation factor 1-alpha OS=Zea mays GN=EF1A PE=3... [more]
EF1A1_DAUCA2.634e-9896.51Elongation factor 1-alpha OS=Daucus carota PE=3 SV... [more]
EF1A_ORYSJ6.277e-9590.53Elongation factor 1-alpha OS=Oryza sativa subsp. j... [more]
EF1A_WHEAT1.826e-9490.00Elongation factor 1-alpha OS=Triticum aestivum GN=... [more]
EF1A_MANES2.385e-9490.00Elongation factor 1-alpha OS=Manihot esculenta GN=... [more]
EF1A_TOBAC4.069e-9490.00Elongation factor 1-alpha OS=Nicotiana tabacum PE=... [more]
EF1A_ARATH4.069e-9490.00Elongation factor 1-alpha OS=Arabidopsis thaliana ... [more]
EF1A_SOLLC1.184e-9389.47Elongation factor 1-alpha OS=Solanum lycopersicum ... [more]
EF1A_SOYBN2.019e-9388.95Elongation factor 1-alpha OS=Glycine max GN=TEFS1 ... [more]
EF1A_VICFA5.876e-9388.42Elongation factor 1-alpha OS=Vicia faba PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC03002D01Rv OF1 Citrus clementina cDNA clone C03002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290969 ID=CX290969; Name=CX290969; organism=Citrus clementina; type=EST; length=649bp
CTTGCTTGCTCTGCGGCTAGGTTTCAATTGTCTCTTCGAAGTTTCAGTTA
ATTTAACAGCCATGGGTAAGGAGAAGACTCACATCAACATTGTGGTGATT
GGCCATGTCGACTCTGGAAAGTCGACCACCACCGGACACTTGATCTACAA
GCTTGGTGGTATTGACAAGCGTGTGATCGAGAGGTTCGAGAAGGAAGCTG
CTGAGATGAACAAGAGGTCATTCAAGTACGCCTGGGTGCTCGACAAGCTC
AAGGCTGAGCGTGAACGTGGTATTACCATTGATATTGCCTTGTGGAAGTT
CGAGACCACCAAGTACTACTGCACCGTCATTGATGCTCCCGGACATCGTG
ACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGACTGTGCCGTC
CTTATCATTGACTCCACCACCGGTGGTTTTGAAGCTGGTATCTCCAAGGA
TGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTTGGTGTGAAGC
AAATGATTTGCTGCTGTAACAAGATGGACGCCNCCACCCCCAAGTACTCA
AAGGCTANGTACGATGAAATTGNGAAAGGAGGTCTCTTTCTACCTGAAGA
ANGGTGGATACAACCCCGAGAAAGTCCCTTTCGTGCCCATCTTTGGTTT
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