CX290983

Overview
NameCX290983
Unique NameCX290983
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig335 contig Ccv1_Contig335:1..463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX290983 vs. ExPASy Swiss-Prot
Match: NUDT3_ARATH (Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.388e-55
Identity = 105/152 (69.08%), Postives = 125/152 (82.24%), Query Frame = 3 
Query:    3 KQQEDATSFFTVIKRRSEFNLDSSLSGHIVDATNHSVGSIYDLYSVPYSEEYNSYLTRASELLHKAGDMASSPSLKRLLHSKADAFLSNNYYDSDIAWIELDSELDVTIGPYETYEDAIFGYKATFEAFIGIRDDKATAQVKLFGDNLQVLE 458
            +Q+  AT FF+VIKRRSE NLD+S   H+  +T     S  DLYS+PYSE Y  +L +ASE L KAGD+ SSPSLK+LLHSKA+AFLSN YY+SDIAW++LDS+LD+TIGPYETYED IFGYKATFE FIGIRDDKATA +KLFGDNL++LE
Sbjct:  346 EQKHAATGFFSVIKRRSEANLDAS--DHLASSTKKLPDSNSDLYSIPYSEIYRPFLKKASEFLQKAGDLVSSPSLKKLLHSKAEAFLSNEYYESDIAWMDLDSKLDITIGPYETYEDEIFGYKATFETFIGIRDDKATADLKLFGDNLKLLE 495
The following BLAST results are available for this feature:
BLAST of CX290983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NUDT3_ARATH6.388e-5569.08Nudix hydrolase 3 OS=Arabidopsis thaliana GN=NUDT3... [more]
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Properties
Property NameValue
Genbank descriptionC03002E05Rv OF1 Citrus clementina cDNA clone C03002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290983 ID=CX290983; Name=CX290983; organism=Citrus clementina; type=EST; length=463bp
AAAAGCAACAGGAAGATGCAACAAGCTTTTTCACTGTTATCAAGAGACGG
AGTGAGTTTAATTTAGACTCTTCACTATCTGGTCATATTGTTGATGCAAC
AAATCATTCAGTTGGCTCCATATATGACCTGTATAGCGTCCCTTATTCTG
AAGAATATAATTCTTATCTCACAAGAGCGTCTGAACTATTGCATAAAGCT
GGGGACATGGCCAGTTCACCTAGTTTGAAGAGGTTGCTACATAGTAAGGC
CGATGCCTTCCTTTCAAACAACTATTATGACTCGGACATAGCCTGGATTG
AATTGGATTCTGAGTTGGATGTCACCATTGGGCCCTATGAGACATATGAA
GATGCAATTTTTGGGTACAAGGCAACATTTGAAGCGTTTATTGGGATTCG
GGATGACAAAGCAACAGCTCAAGTTAAACTCTTCGGTGATAATTTGCAGG
TTTTGGAACAAAA
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