CX290986

Overview
NameCX290986
Unique NameCX290986
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 7.395e-91
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            VVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF YAR+HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD
Sbjct:  104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 274
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 332.413 bits (851), Expect = 7.395e-91
Identity = 167/171 (97.66%), Postives = 169/171 (98.83%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            VVLDMTTLTIMRALPREVDPVVYNMLHEDPGN+SYSAVGGL DQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMF YAR+HQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD
Sbjct:  104 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 274
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.680e-83
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:   98 VALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 268
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.680e-83
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:   98 VALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 268
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.680e-83
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:   98 VALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 268
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 9.680e-83
Identity = 151/171 (88.30%), Postives = 159/171 (92.98%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VYNM HEDPGNVSYS +GGLS+QIRELRE IELPL NPELF RVGI PPKG LLYGPPGTGKTLLARA+AS +D NFLKVVSS+I+DKYIGESARLIREMF YARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:   98 VALDMTTLTIMRYLPREVDPLVYNMSHEDPGNVSYSEIGGLSEQIRELREVIELPLTNPELFQRVGIIPPKGCLLYGPPGTGKTLLARAVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 268
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 1.398e-81
Identity = 147/171 (85.96%), Postives = 159/171 (92.98%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VY M HEDPGN+SYS VGGL++QIRELRE +ELPL+NPELF RVGI PPKG LL+GPPGTGKTLLARA+AS +D NFLKVVSSAI+DKYIGESAR+IREMF YARDHQPCI+FMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD
Sbjct:  115 VSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 285
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 1.546e-80
Identity = 144/171 (84.21%), Postives = 161/171 (94.15%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD+TTLTI++ LPREVDP+++NM  E PG+VSY  +GGLS+QIRELRE +ELPLM PELF+RVGIK PKGVLLYGPPGTGKTLLARAIASN++ANFLKVVSSAI+DKYIGESAR+IREMFGYARDHQPC+IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:  102 VTLDLTTLTILKILPREVDPIIFNMTAESPGSVSYGEIGGLSNQIRELREVVELPLMIPELFIRVGIKAPKGVLLYGPPGTGKTLLARAIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 272
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_SCHPO (Probable 26S protease subunit rpt4 OS=Schizosaccharomyces pombe GN=rpt4 PE=2 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 2.019e-80
Identity = 144/171 (84.21%), Postives = 162/171 (94.74%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LDMTTLTIMR LPREVDP+VYNM  EDPG++S++ VGGL++QIRELRE IELPL NPELFLRVGIKPPKGVLLYGPPGTGKTLLARA+A+++  NFLKVVSSAI+DKYIGESAR+IREMFGYA++H+PC+IFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQ+DGFD
Sbjct:   97 VSLDMTTLTIMRILPREVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAVAASLGVNFLKVVSSAIVDKYIGESARIIREMFGYAKEHEPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD 267
[Close]
BLAST of CX290986 vs. ExPASy Swiss-Prot
Match: PRS10_YEAST (26S protease subunit RPT4 OS=Saccharomyces cerevisiae GN=RPT4 PE=1 SV=4)

HSP 1 Score: 268.47 bits (685), Expect = 1.311e-71
Identity = 128/171 (74.85%), Postives = 150/171 (87.72%), Query Frame = 2 
Query:    2 VVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFD 514
            V LD+TTLTIMR LPRE DP+VYNM   + G +++  +GGL++QIRELRE IELPL NPE+F RVGIKPPKGVLLYGPPGTGKTLLA+A+A+ I ANF+   +S I+DKYIGESAR+IREMF YA++H+PCIIFMDE+DAIGGRRFSEGTSADREIQRTLMELL Q+DGFD
Sbjct:  146 VTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316
The following BLAST results are available for this feature:
BLAST of CX290986 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 375
Match NameE-valueIdentityDescription
PS10B_ARATH7.395e-9197.6626S protease regulatory subunit S10B homolog B OS=... [more]
PS10A_ARATH7.395e-9197.6626S protease regulatory subunit 10B homolog A OS=A... [more]
PRS10_SPETR9.680e-8388.3026S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE9.680e-8388.3026S protease regulatory subunit S10B OS=Mus muscul... [more]
PRS10_HUMAN9.680e-8388.3026S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS10_BOVIN9.680e-8388.3026S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS10_CAEEL1.398e-8185.96Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS10_DICDI1.546e-8084.2126S protease regulatory subunit S10B OS=Dictyostel... [more]
PRS10_SCHPO2.019e-8084.21Probable 26S protease subunit rpt4 OS=Schizosaccha... [more]
PRS10_YEAST1.311e-7174.8526S protease subunit RPT4 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC03002F01Rv OF1 Citrus clementina cDNA clone C03002F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290986 ID=CX290986; Name=CX290986; organism=Citrus clementina; type=EST; length=515bp
AGTTGTTCTTGATATGACAACGCTCACAATCATGCGAGCTCTTCCTCGTG
AAGTTGATCCGGTTGTATATAACATGTTGCATGAAGATCCGGGTAATGTT
AGCTATTCGGCTGTGGGTGGTTTATCTGATCAGATCAGAGAATTAAGGGA
ATCTATTGAGCTACCTTTGATGAATCCTGAGCTTTTCCTTAGAGTTGGAA
TTAAACCTCCCAAGGGCGTTCTTCTTTATGGGCCTCCTGGAACTGGCAAG
ACATTATTAGCACGAGCAATTGCCAGTAACATAGATGCAAATTTTCTGAA
GGTGGTTTCAAGTGCCATTATTGATAAGTACATTGGGGAAAGTGCAAGGT
TGATAAGAGAGATGTTTGGATATGCACGTGATCATCAACCCTGCATCATT
TTTATGGATGAAATTGATGCCATCGGTGGACGCCGTTTTAGTGAAGGAAC
CAGTGCAGATCGTGAAATTCAAAGGACACTGATGGAGTTACTTAATCAGC
TTGATGGATTTGATC
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