CX290997

Overview
NameCX290997
Unique NameCX290997
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX290997 vs. ExPASy Swiss-Prot
Match: PPOM_TOBAC (Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.011e-35
Identity = 60/98 (61.22%), Postives = 71/98 (72.45%), Query Frame = 2
Query:   80 MASAPGEDNQRSAKRXXXXXXXXXXXXXXYKLKSNGVNVMVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKR 373
            MA + GED   SAKR              YKLK +G+NV VFEA+ +AGGKLRS+S+DGLIWDEGANTMTESE +V  L+D LG+REKQQFP+SQ KR
Sbjct:    1 MAPSAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTMTESEGDVTFLIDSLGLREKQQFPLSQNKR 98          

HSP 2 Score: 49.6766 bits (117), Expect = 6.011e-35
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1
Query:  355 NFTVQTIPTNPIALITSNFLSAQSKFQIILEPFLWKKSDSAKVS 486
            N T   +P+NPI LI SNFLS  SK Q++LEP LWK    ++VS
Sbjct:  103 NGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVS 146          
BLAST of CX290997 vs. ExPASy Swiss-Prot
Match: PPOCM_SPIOL (Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.737e-25
Identity = 64/128 (50.00%), Postives = 74/128 (57.81%), Query Frame = 2
Query:  113 SAKRXXXXXXXXXXXXXXYKLKSNGVNVMVFEADERAGGKLRSISKDGLIWDEGANTMTESEMEVKGLLDDLGIREKQQFPISQYKR----------SPPIPLLL*RVTFFLLNQSFRSFLSPFCGRK 466
            SAKR              YKLKSNG+NV +FEAD RAGGKL+++ KDGLIWDEGANTMTES+ EV  L DDLGIREK Q PISQ KR           P  P+ L +          +  L PF  +K
Sbjct:   41 SAKRVAVVGAGVSGLAAAYKLKSNGLNVTLFEADSRAGGKLKTVVKDGLIWDEGANTMTESDEEVTSLFDDLGIREKLQLPISQNKRYIARDGLPVLLPSNPVALLKSNILSAKSKLQIMLEPFLWKK 168          
The following BLAST results are available for this feature:
BLAST of CX290997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PPOM_TOBAC6.011e-3561.22Protoporphyrinogen oxidase, mitochondrial OS=Nicot... [more]
PPOCM_SPIOL6.737e-2550.00Protoporphyrinogen oxidase, chloroplastic/mitochon... [more]
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Properties
Property NameValue
Genbank descriptionC03002G04Rv OF1 Citrus clementina cDNA clone C03002G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX290997 ID=CX290997; Name=CX290997; organism=Citrus clementina; type=EST; length=503bp
CTGCTCAGAGTCACAGTTTTTGACTAGTAGCAGCACCCTCTGACTTCTCA
TTTCTCAGGGCTCCGATTTTGACGACACAATGGCGTCAGCTCCCGGAGAA
GATAACCAGCGCTCTGCCAAACGAGTGGCTGTTGTTGGTGCTGGTGTTAG
CGGGCTTGCAGCTGCTTACAAGTTAAAATCAAATGGTGTAAATGTCATGG
TATTTGAAGCTGATGAAAGAGCTGGAGGGAAGTTGAGGAGTATCTCAAAA
GATGGTCTAATTTGGGATGAGGGAGCAAACACAATGACTGAGAGCGAGAT
GGAAGTCAAAGGTTTGCTCGATGATCTTGGAATTCGAGAAAAACAACAAT
TTCCAATTTCACAGTACAAACGATCCCCACCAATCCCATTGCTCTTATAA
CGAGTAACTTTCTTTCTGCTCAATCAAAGTTTCAGATCATTCTTGAGCCC
TTTTTGTGGAAGAAAAGTGACTCTGCGAAAGTGTCTGCTGAGGATGCAAA
AGA
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