CX291009

Overview
NameCX291009
Unique NameCX291009
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291009 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 8.071e-28
Identity = 82/177 (46.33%), Postives = 98/177 (55.37%), Query Frame = 2 
Query:   14 VNFLDEDRYLDHVDGRSGDVSREEAEAASWLL-PIPKVA---------------------DLNTGQAQEPYVFPDMDPYLDLDYGHVDTKLEAQEQNSSGTDGVVPVQTRNVNANGHLVNDACFDLDFPGSK---SYGYGYNXXXXXXXXXXXXXXXEVGVVPDGSSAMTDITNPYG 469
            VNFLD D Y   +DG +G    EE EAASWLL P PK                       ++NTGQ    Y+F D DPYLDLDYG+VD K+E+ EQNSSGTDGVVPV+ R V      VN+ CF++DF G     +YG GYN               EVGVVPDG S + D++ PYG
Sbjct:  109 VNFLD-DCYFSDIDG-NGSREEEEEEAASWLLLPNPKTTTTATAGIVAVTSAEEVPGDSPEMNTGQQ---YLFSDPDPYLDLDYGNVDPKVESLEQNSSGTDGVVPVENRTVRI--PTVNENCFEMDFTGGSKGFTYGGGYN----CISHSVSSSSMEVGVVPDGGS-VADVSYPYG 273
The following BLAST results are available for this feature:
BLAST of CX291009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COL4_ARATH8.071e-2846.33Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC03002H05Rv OF1 Citrus clementina cDNA clone C03002H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291009 ID=CX291009; Name=CX291009; organism=Citrus clementina; type=EST; length=493bp
CAACGGCGGAGTAGTCAACTTCTTAGACGAAGACCGCTACTTGGACCACG
TCGACGGGAGAAGCGGTGACGTCAGCAGGGAGGAAGCAGAGGCGGCTTCG
TGGCTGCTGCCGATCCCGAAGGTGGCGGATTTGAACACGGGTCAGGCGCA
GGAGCCGTATGTGTTCCCGGATATGGATCCGTATTTGGATTTAGATTACG
GGCATGTGGATACGAAGCTAGAAGCCCAGGAGCAAAACAGTTCGGGCACT
GACGGTGTTGTTCCCGTACAAACCAGAAACGTTAACGCTAACGGCCATTT
GGTCAACGATGCATGCTTTGACCTCGATTTTCCAGGCTCCAAATCTTACG
GTTATGGCTACAACTCTCACTCGCAGTGCCTCAGTCAGAGTGTGTCGTCG
TCATCGTTGGAGGTGGGAGTGGTGCCAGATGGAAGTAGTGCGATGACGGA
CATAACGAATCCGTACGGCAAAGGAGTGGGGGTGGAGGCAGGG
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