CX291012

Overview
NameCX291012
Unique NameCX291012
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length501
Libraries
Library NameType
OF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14879 contig Ccv1_Contig14879:673..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 9.738e-77
Identity = 137/166 (82.53%), Postives = 147/166 (88.55%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPGVWEYIRVNVH           YLHFKEELVDG +NGNFVLELDF+PFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHC+KGKNMMLNDRIQN+N+LQ+VLRKAEEYLTT+APETP+ +   +FQEIGL RGWGDTAE  LEMIQ
Sbjct:   87 AVRPRPGVWEYIRVNVHALVVEELRVPEYLHFKEELVDGSTNGNFVLELDFDPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCYKGKNMMLNDRIQNVNALQYVLRKAEEYLTTIAPETPYVKFEHKFQEIGLVRGWGDTAEGVLEMIQ 252          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 1.455e-72
Identity = 131/166 (78.92%), Postives = 142/166 (85.54%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPGVWEY+RVNVH           YLHFKEELVDG SNGNFVLELDFEPFNA+FPRPTL+KSIGNGV+FLNRHLSAKLFHDKES+HPLLEFLR+H  KGK +MLNDRIQN ++LQHVLRKAEEYL TV PETP+SE   +FQEIGLERGWGD AER LE IQ
Sbjct:   87 AVRPRPGVWEYLRVNVHALVVEELQPAEYLHFKEELVDGSSNGNFVLELDFEPFNAAFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLNDRIQNPDALQHVLRKAEEYLGTVPPETPYSEFEHKFQEIGLERGWGDNAERVLESIQ 252          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 5.529e-72
Identity = 130/166 (78.31%), Postives = 143/166 (86.14%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPGVWEY+RVNVH           +L FKEELVDG +NGNFVLELDFEPF ASFPRPTL+KSIGNGV+FLNRHLSAKLFHDKES+HPLLEFLR+H +KGK +MLNDRIQN +SLQHVLRKAEEYL+TV PETP+SE   RFQEIGLERGWGD+AER LE IQ
Sbjct:   87 AVRPRPGVWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTVDPETPYSEFEHRFQEIGLERGWGDSAERVLESIQ 252          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 5.529e-72
Identity = 129/166 (77.71%), Postives = 142/166 (85.54%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPG+WEY+RVNVH           +L FKEELVDG +NGNFVLELDFEPF ASFPRPTL+KSIGNGV FLNRHLSAKLFHDKES+HPLLEFLR+H +KGK +MLNDRIQN +SLQHVLRKAEEYL+T+ PETP+SE   RFQEIGLERGWGDTAER LE IQ
Sbjct:   87 AVRPRPGIWEYLRVNVHALVVENLQPAEFLKFKEELVDGSANGNFVLELDFEPFTASFPRPTLNKSIGNGVHFLNRHLSAKLFHDKESLHPLLEFLRLHSYKGKTLMLNDRIQNPDSLQHVLRKAEEYLSTIDPETPYSEFEHRFQEIGLERGWGDTAERVLESIQ 252          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 1.362e-70
Identity = 129/166 (77.71%), Postives = 139/166 (83.73%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPGVWEY+RVNVH           YL FKEELVDG SNGNFVLELDFEPF ASFPRPTL+KSIGNGV+FLNRHLSAKLFHDKES+HPLLEFLR+H  KGK +MLNDRIQN ++LQHVLRKAEEYL TV PETP+S    +FQEIGLERGWGD AER LE IQ
Sbjct:   87 AVRPRPGVWEYLRVNVHALVVEVLQPAEYLRFKEELVDGSSNGNFVLELDFEPFTASFPRPTLNKSIGNGVQFLNRHLSAKLFHDKESLHPLLEFLRLHSVKGKTLMLNDRIQNPDALQHVLRKAEEYLGTVPPETPYSAFEHKFQEIGLERGWGDNAERVLESIQ 252          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 1.841e-67
Identity = 124/165 (75.15%), Postives = 137/165 (83.03%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+R RPGVWEYIRVNV+           YL FKEELVDG SNGNFVLELDFEPF ASFP+PTL+KSIGNGVEFLNRHLSAK+FHDKESM PLLEFLR H +KGK MMLNDRIQN N+LQ+VLRKAEEYL  + PETP+ E   +FQEIGLE+GWGDTAER LEM+
Sbjct:   87 AIRLRPGVWEYIRVNVNALVVEELSVPEYLQFKEELVDGASNGNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMTPLLEFLRAHHYKGKTMMLNDRIQNSNTLQNVLRKAEEYLIMLPPETPYFEFEHKFQEIGLEKGWGDTAERVLEMV 251          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.101e-67
Identity = 123/165 (74.55%), Postives = 136/165 (82.42%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+R RPGVWEY+RVNV+           YL FKEELVDG SNGNFVLELDFEPF ASFP+PTL+KSIGNGVEFLNRHLSAK+FHDKESM PLLEFLR H +KGK MMLNDRI N N+LQ+VLRKAEEYL  + PETPF E   +FQEIGLE+GWGDTAER LEM+
Sbjct:   87 AIRLRPGVWEYVRVNVNALVVEELSVPEYLQFKEELVDGASNGNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMAPLLEFLRAHHYKGKTMMLNDRIHNSNTLQNVLRKAEEYLIMLPPETPFFEFEHKFQEIGLEKGWGDTAERVLEMV 251          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS2_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 2.035e-66
Identity = 124/165 (75.15%), Postives = 138/165 (83.64%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMI 496
            A+R RPGVWEY+RVNV+           +L FKEELV+G SN NFVLELDFEPF ASFP+PTL+KSIGNGVEFLNRHLSAK+FHDKESM PLLEFLRVH +KGK MMLNDRIQNL +LQ VLRKAEEYLTT++PET +S    +FQEIGLERGWGDTAER LEMI
Sbjct:   87 AIRLRPGVWEYVRVNVNALIVEELTVPEFLQFKEELVNGTSNDNFVLELDFEPFTASFPKPTLTKSIGNGVEFLNRHLSAKMFHDKESMTPLLEFLRVHHYKGKTMMLNDRIQNLYTLQKVLRKAEEYLTTLSPETSYSAFEHKFQEIGLERGWGDTAERVLEMI 251          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 6.547e-65
Identity = 116/166 (69.88%), Postives = 135/166 (81.33%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEMIQ 499
            AVRPRPGVWEY+RVN+H           +LHFKEELVDG  NGNF LELDFEPFNAS PRPTL K IGNGV+FLNRHLSAKLFHDKES+ PLL+FLR+H H+GKN+ML+++IQNLN+LQH LRKAEEYL  +  ET + E   +F+EIGLERGWGD AER L+MI+
Sbjct:   89 AVRPRPGVWEYLRVNLHALVVEELQPAEFLHFKEELVDGVKNGNFTLELDFEPFNASIPRPTLHKYIGNGVDFLNRHLSAKLFHDKESLLPLLKFLRLHSHQGKNLMLSEKIQNLNTLQHTLRKAEEYLAELKSETLYEEFEAKFEEIGLERGWGDNAERVLDMIR 254          
BLAST of CX291012 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 8.848e-62
Identity = 112/164 (68.29%), Postives = 131/164 (79.88%), Query Frame = 2
Query:    2 AVRPRPGVWEYIRVNVHXXXXXXXXXXXYLHFKEELVDGGSNGNFVLELDFEPFNASFPRPTLSKSIGNGVEFLNRHLSAKLFHDKESMHPLLEFLRVHCHKGKNMMLNDRIQNLNSLQHVLRKAEEYLTTVAPETPFSELALRFQEIGLERGWGDTAERALEM 493
            A+R RPGVWEY+RVNVH           YL FKEELV G S+ NFVLELDF PF ASFPRPTL+KSIGNGVEFLNRHLSAK+FH K+SMHPLLEFLR+H + GK +MLN+R+QN+N LQ +LRKA +YL+T+  +TP+SE   +FQEIG ERGWGDTAER  EM
Sbjct:   89 AIRLRPGVWEYVRVNVHHLVVEELSVPQYLQFKEELVIGSSDANFVLELDFAPFTASFPRPTLTKSIGNGVEFLNRHLSAKMFHGKDSMHPLLEFLRLHNYNGKTLMLNNRVQNVNGLQSMLRKAGDYLSTLPSDTPYSEFEHKFQEIGFERGWGDTAERVTEM 252          
The following BLAST results are available for this feature:
BLAST of CX291012 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUSY_ALNGL9.738e-7782.53Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUSY_SOYBN1.455e-7278.92Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_VICFA5.529e-7278.31Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_MEDSA5.529e-7277.71Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUSY_PHAAU1.362e-7077.71Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS1_SOLTU1.841e-6775.15Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUSY_SOLLC4.101e-6774.55Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_SOLTU2.035e-6675.15Sucrose synthase OS=Solanum tuberosum PE=3 SV=1[more]
SUS1_ARATH6.547e-6569.88Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUS1_DAUCA8.848e-6268.29Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC03002H08Rv OF1 Citrus clementina cDNA clone C03002H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291012 ID=CX291012; Name=CX291012; organism=Citrus clementina; type=EST; length=501bp
TGCCGTGCGTCCAAGGCCCGGTGTGTGGGAGTACATCCGAGTGAATGTCC
ATGCCCTTGTCGTTGAGGAGCTGCTTGTAGCCGAGTACCTGCACTTCAAG
GAGGAACTTGTCGATGGAGGCTCCAATGGCAACTTCGTGCTTGAGTTGGA
TTTTGAGCCATTCAATGCCTCGTTCCCTCGCCCAACTCTTTCAAAGTCTA
TTGGAAATGGTGTGGAATTCCTTAACCGCCACCTTTCTGCGAAGCTCTTC
CATGACAAGGAGAGCATGCATCCACTGCTTGAATTTCTCCGCGTCCACTG
CCACAAGGGCAAAAACATGATGCTGAATGACAGAATTCAGAACTTGAATT
CTCTTCAACACGTTCTGAGGAAGGCAGAGGAGTATCTGACCACAGTGGCA
CCAGAAACGCCATTCTCTGAGTTGGCACTAAGATTTCAGGAGATTGGTTT
GGAGAGAGGTTGGGGTGATACTGCTGAGCGTGCACTTGAGATGATTCAGC
T
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