CX291047

Overview
NameCX291047
Unique NameCX291047
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length497
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9486 contig Ccv1_Contig9486:352..848. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291047 vs. ExPASy Swiss-Prot
Match: STT7_ARATH (Serine/threonine-protein kinase SNT7, chloroplastic OS=Arabidopsis thaliana GN=SNT7 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 55/156 (35.26%), Postives = 81/156 (51.92%), Query Frame = 2
Query:   32 LVFDSLIGRRNLKRTDFVIGDKLGEGSFGVVYSGAIVPKNAVVEDRGLKRGRGNGKSL*LDGRFKEKVILKKVKIGVQGAEEFGDYEEWFNYRLSRAAPETCAEFLGSFVADKTNSLFTKGGK-WLVWKFEGNQTLADYMKDRTFPFKLETYMFGR 496
            L F   + R   ++ DFV+G KLGEGSFGVVY  ++  K +  E                      + +LKK       A E+G  E W N R+ RA   +CA+F+  F+ DK++    KG + WL+WK+EG  TLA  M+ + FP+ +ET + G+
Sbjct:  118 LAFVERLFRPTFRKDDFVVGKKLGEGSFGVVYKVSLSKKRSNEEG---------------------EYVLKK-------ATEYGAVEIWMNERVRRACGNSCADFVYGFL-DKSSK---KGPEYWLLWKYEGESTLAGLMQSKEFPYNVETIILGK 241          
BLAST of CX291047 vs. ExPASy Swiss-Prot
Match: STT7_CHLRE (Serine/threonine-protein kinase stt7, chloroplastic OS=Chlamydomonas reinhardtii GN=STT7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14
Identity = 56/181 (30.94%), Postives = 77/181 (42.54%), Query Frame = 2
Query:    2 IDAYLFAPLQLVFDSLIGRRNLKRTDFVIGDKLGEGSFGVVYSGAIVPKNAVVEDRGLKRGRGNGKSL*LDGRFKEKVILKKVKIGVQGAEEFGDYEEWFNYRLSRAAPETCAEFLGSFVADKTNSLFTKGGK----------------WLVWKFEGNQTLADYMKDRTFPFKLETYMFGR 496
            ID Y+ APL+      I +      D V+G +LG G FG V+ G +  +  V                      K  +I+KK K       EFG+ E W N R+SR A    AEF+ +F       L    GK                WLVW +EG+ TL+  M+ R +P+ LE  +FGR
Sbjct:  118 IDYYIRAPLKRKQTKAIDKN-----DIVLGKRLGTGGFGTVFKGELKEEGGV----------------------KTSIIIKKAK-------EFGEAEVWMNERMSRVAGHHVAEFVTAFDESLNVPLPAAAGKRAAPVQPTSPLDANSIWLVWVYEGDNTLSSLMERREWPYNLEPLLFGR 264          
The following BLAST results are available for this feature:
BLAST of CX291047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
STT7_ARATH4.995e-1735.26Serine/threonine-protein kinase SNT7, chloroplasti... [more]
STT7_CHLRE3.031e-1430.94Serine/threonine-protein kinase stt7, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionC03003D05SK OF2 Citrus clementina cDNA clone C03003D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291047 ID=CX291047; Name=CX291047; organism=Citrus clementina; type=EST; length=497bp
CATTGATGCATACCTTTTCGCTCCTTTGCAATTGGTTTTTGACAGCTTGA
TTGGAAGAAGAAACCTGAAGAGGACTGATTTTGTGATAGGAGATAAACTG
GGAGAAGGGTCTTTTGGTGTTGTTTATTCTGGAGCCATTGTACCAAAGAA
TGCGGTTGTTGAAGACCGAGGACTGAAAAGAGGAAGAGGAAACGGAAAAT
CATTATAGTTGGATGGCAGGTTCAAGGAAAAGGTCATTCTTAAGAAGGTG
AAAATTGGAGTCCAGGGGGCGGAAGAATTTGGTGATTATGAGGAATGGTT
TAATTACAGGCTATCAAGAGCTGCTCCTGAAACATGTGCGGAGTTCCTTG
GAAGTTTTGTTGCTGATAAAACAAACTCACTGTTTACTAAAGGTGGCAAG
TGGCTCGTCTGGAAATTTGAGGGAAATCAAACTCTTGCTGATTACATGAA
AGATCGCACCTTCCCTTTTAAGTTAGAGACTTACATGTTTGGGCGTG
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