CX291066

Overview
NameCX291066
Unique NameCX291066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length628
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14497 contig Ccv1_Contig14497:500..1127. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291066 vs. ExPASy Swiss-Prot
Match: KPYA_RICCO (Pyruvate kinase isozyme A, chloroplastic OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.271e-33
Identity = 73/141 (51.77%), Postives = 93/141 (65.96%), Query Frame = 3
Query:    3 RHERQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVISDLTPAHVTSTAFQSIQVRTI 425
            R E+         +G +  D I+E+ICN A  MANNLGVDA+FVYTK GHMASLLSR RP+ PIFAFT   S R  LNLQWG+IP  ++ +DDME+N+ KT  L+K +GM+K GD V+ +SD+          QSIQV  +
Sbjct:  451 REEKHHEAMELPAIGSTYSDSISEEICNSAAKMANNLGVDALFVYTKDGHMASLLSRCRPDCPIFAFTTTTSVRRRLNLQWGLIPFRLSFADDMESNLNKTFSLLKARGMIKSGDLVIAVSDM---------LQSIQVMNV 582          
BLAST of CX291066 vs. ExPASy Swiss-Prot
Match: KPYA_TOBAC (Pyruvate kinase isozyme A, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.076e-32
Identity = 70/141 (49.65%), Postives = 94/141 (66.67%), Query Frame = 3
Query:    3 RHERQSALCGQRQLGESLHDRIAEQICNCAVDMANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVISDLTPAHVTSTAFQSIQVRTI 425
            R +++  +     +  S  D I+E+ICN A  MANNL VDA+FVYTK+GHMASLLSR RP+ PIFAFT   S R  LNLQWG++P  ++ SDDME+N+ KT  L+K +GM+K GD ++ +SD+          QSIQV  +
Sbjct:  461 REQKRHEVIELPSIASSFSDSISEEICNSAAKMANNLEVDALFVYTKNGHMASLLSRCRPDCPIFAFTTTTSVRRRLNLQWGLMPFRLSFSDDMESNLNKTFSLLKARGMIKSGDLIIAVSDM---------LQSIQVMNV 592          
BLAST of CX291066 vs. ExPASy Swiss-Prot
Match: KPYG_TOBAC (Pyruvate kinase isozyme G, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 39/109 (35.78%), Postives = 58/109 (53.21%), Query Frame = 3
Query:   99 MANNLGVDAIFVYTKHGHMASLLSRNRPNPPIFAFTNDDSTRMALNLQWGVIPVLVNLSDDMETNIAKTIDLIKMKGMVKYGDAVLVISDLTPAHVTSTAFQSIQVRTI 425
            MAN L    I V+T+ G MA +LS NRP+  +FAFTN++  +  L L  GV+P+ +  S D E   ++ I L+  K +VK G  V ++           +   IQVR +
Sbjct:  453 MANTLSTP-IIVFTRTGSMAIILSHNRPSSTVFAFTNNERVKQRLALYHGVVPIYMEFSSDAEETFSRAIKLLLSKSLVKDGQYVTLVQSGAQPIWRRHSTHHIQVRKV 560          
The following BLAST results are available for this feature:
BLAST of CX291066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
KPYA_RICCO1.271e-3351.77Pyruvate kinase isozyme A, chloroplastic OS=Ricinu... [more]
KPYA_TOBAC1.076e-3249.65Pyruvate kinase isozyme A, chloroplastic OS=Nicoti... [more]
KPYG_TOBAC1.786e-1135.78Pyruvate kinase isozyme G, chloroplastic OS=Nicoti... [more]
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Properties
Property NameValue
Genbank descriptionC03003F07SK OF2 Citrus clementina cDNA clone C03003F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291066 ID=CX291066; Name=CX291066; organism=Citrus clementina; type=EST; length=628bp
AGCGGCACGAGCGACAAAGTGCTCTTTGTGGACAGCGTCAGTTAGGTGAA
TCACTGCATGATCGCATTGCTGAGCAGATCTGCAATTGCGCTGTTGATAT
GGCTAACAACCTCGGAGTGGATGCCATTTTTGTCTATACTAAGCATGGCC
ATATGGCGTCTCTTCTGTCCCGCAACCGTCCAAACCCTCCCATATTTGCA
TTCACAAATGATGACAGCACCCGGATGGCTCTGAACTTGCAATGGGGGGT
TATTCCCGTACTAGTCAATTTATCAGATGACATGGAAACTAACATCGCGA
AAACCATAGATCTTATAAAAATGAAGGGGATGGTGAAATACGGGGATGCT
GTTCTAGTAATCTCGGATTTAACTCCAGCTCATGTTACTTCAACAGCATT
CCAATCAATCCAGGTGAGGACAATCGTTTAGGGTAAAACTTTCTTAGGGA
AAACAAAAAGTATGTGCTGTCAAATGCTACATGTTCTTGCTTAACTCTGC
TATGCTCATTGTGATATGAAAGCTTGTTCCTCTAGACGCACAATACACTT
CAGTATGAAATTTGAGAATGTTCATTTATATTCTTATATATTCATAATTA
ATCTAAAAAAAAAAAAAAAAAAAACGGG
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