CX291077

Overview
NameCX291077
Unique NameCX291077
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length546
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig338 contig Ccv1_Contig338:1..546. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: PIR_ARATH (Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 3.042e-88
Identity = 159/182 (87.36%), Postives = 171/182 (93.96%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQLNWGTKSELK 546
            HELLS+DLSID F L+LNEMQENISLVSFSSRLA+QIWSEMQSDFLPNFILCNTTQRF+RSSKVP    QKPSVP AKPSFYCGTQDLN+AHQSFARLHSGFFGIPH+FSIV+LLGSRSLPWLIRALLDH+SNKITTLEP+I GLQE LPKSIGLL FD GVTGCM+L++EQLNWGTKSELK
Sbjct:  818 HELLSQDLSIDPFSLMLNEMQENISLVSFSSRLATQIWSEMQSDFLPNFILCNTTQRFVRSSKVP--PTQKPSVPSAKPSFYCGTQDLNAAHQSFARLHSGFFGIPHLFSIVKLLGSRSLPWLIRALLDHISNKITTLEPMISGLQEALPKSIGLLSFDGGVTGCMKLIREQLNWGTKSELK 997          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: PIRA_DICDI (Protein pirA OS=Dictyostelium discoideum GN=pirA PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.178e-23
Identity = 58/165 (35.15%), Postives = 96/165 (58.18%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTG 492
            H+LLS+   ID F  I NE+ E+ SLVS+  R+   I  E+ +DF PN+   + TQRFI++       +++ ++P   P F  G + LN+A+ +   L+  F G+PH+ SI+R++G ++LP ++  +L ++  KIT  L P +  L + +P S  L  +D G  G
Sbjct:  801 HKLLSEYFDIDPFESIFNEINESTSLVSYHGRIVLHIIFELVADFAPNYTFNSITQRFIKAPYTFTEELKRDALPKTNPVFLFGNKYLNAAYANSIELYKNFIGVPHIQSILRIVGKKNLPLIVAEVLRNIEIKITNVLSPYVSELLQGMPASTKLPIYDYGTEG 965          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP1_DANRE (Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio GN=cyfip1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.298e-16
Identity = 53/174 (30.46%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H+LLSK L++DS   +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R+        Q+   P A+P +  G++ LN A+ S   L+  F G PH+ +I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  809 HKLLSKYLTLDSIDAMFREANHNVSAPY--GRITLHVFWELNYDFLPNYCYNGSTNRFVRTILPFSQEFQRDKPPNAQPQYLYGSKALNLAYSSIYSLYRNFVGPPHIKAICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQL 980          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP1_MOUSE (Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.858e-15
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H+LLS+ L++DSF  +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R+        Q+   P A+P +  G++ LN A+ S    +  F G PH   I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  809 HKLLSRYLTLDSFDAMFREANHNVSAPY--GRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQL 980          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP1_HUMAN (Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.704e-14
Identity = 51/174 (29.31%), Postives = 84/174 (48.28%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H+LLS+ L++D F  +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R+        Q+   P A+P +  G++ LN A+ S    +  F G PH   I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  809 HKLLSRYLTLDGFDAMFREANHNVSAPY--GRITLHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQL 980          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP2_XENLA (Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.198e-13
Identity = 50/174 (28.74%), Postives = 83/174 (47.70%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H LLSK L++DSF  +  E   N+S     + L   ++ E+  DFLPN+    +T RF+R++       Q+      +P +  G++ LN A+      +  F G PH  +I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  808 HRLLSKHLTLDSFDAMFREANHNVSAPYGRNTL--HVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTVLQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQL 979          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP2_MOUSE (Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 48/174 (27.59%), Postives = 82/174 (47.13%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H LL K +++DSF  +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R++       Q+      +P +  G++ LN A+      +  F G PH  +I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  808 HRLLCKHMTLDSFDAMFREANHNVSAPY--GRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQL 979          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP2_HUMAN (Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 5.483e-13
Identity = 48/174 (27.59%), Postives = 82/174 (47.13%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H LL K +++DSF  +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R++       Q+      +P +  G++ LN A+      +  F G PH  +I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  833 HRLLCKHMTLDSFDAMFREANHNVSAPY--GRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANVQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVKSLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQL 1004          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFP2_PONAB (Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 48/174 (27.59%), Postives = 82/174 (47.13%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLASVQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKIT-TLEPLIMGLQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H LL K +++DSF  +  E   N+S      R+   ++ E+  DFLPN+    +T RF+R++       Q+      +P +  G++ LN A+      +  F G PH  +I RLLG + +  ++  LL  + + +  T+   +  L E +PK   L   + G  G +     QL
Sbjct:  808 HRLLCKHMTLDSFDAMFREANHNVSAPY--GRITLHVFWELNFDFLPNYCYNGSTNRFVRTAIPFTQEPQRDKPANIQPYYLYGSKPLNIAYSHIYSSYRNFVGPPHFKTICRLLGYQGIAVVMEELLKIVESLLQGTILQYVKTLIEVMPKICRLPRHEYGSPGILEFFHHQL 979          
BLAST of CX291077 vs. ExPASy Swiss-Prot
Match: CYFIP_DROPS (Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura pseudoobscura GN=Sra-1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.917e-12
Identity = 53/184 (28.80%), Postives = 93/184 (50.54%), Query Frame = 1
Query:    1 HELLSKDLSIDSFRLILNEMQENISLVSFSSRLASQIWSEMQSDFLPNFILCNTTQRFIRSSKVPLAS---VQKPSVPYAKPSFYCGTQDLNSAHQSFARLHSGFFGIPHMFSIVRLLGSRSLPWLIRALLDHMSNKITTLEPLIMG--------LQETLPKSIGLLHFDSGVTGCMRLVKEQL 519
            H+LLSK L++D+F  ++ E   N+  ++   R+   ++ E+  DFL N+     T RFIR+ KV L+S   +Q+   P     +  G++ LN+A+ +    ++GF G PH  ++ RLLG + +  ++  +L  +      ++PLI G        L   +PKS  L   + G  G +   +  L
Sbjct:  828 HKLLSKYLALDNFDGMVKEANHNV--LAPYGRITLHVFVELNYDFLVNYCYNAATNRFIRT-KVNLSSTQAIQREKPPQMSHYYLWGSKQLNAAYSTQYGQYTGFVGSPHFHAMCRLLGYQGIAVVMDIILKDI------VKPLIQGSLLQFTKTLMIAMPKSCKLPRCEYGSPGVLSYYQAHL 1002          
The following BLAST results are available for this feature:
BLAST of CX291077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PIR_ARATH3.042e-8887.36Protein PIR OS=Arabidopsis thaliana GN=PIR PE=1 SV... [more]
PIRA_DICDI1.178e-2335.15Protein pirA OS=Dictyostelium discoideum GN=pirA P... [more]
CYFP1_DANRE5.298e-1630.46Cytoplasmic FMR1-interacting protein 1 homolog OS=... [more]
CYFP1_MOUSE5.858e-1529.89Cytoplasmic FMR1-interacting protein 1 OS=Mus musc... [more]
CYFP1_HUMAN1.704e-1429.31Cytoplasmic FMR1-interacting protein 1 OS=Homo sap... [more]
CYFP2_XENLA4.198e-1328.74Cytoplasmic FMR1-interacting protein 2 OS=Xenopus ... [more]
CYFP2_MOUSE5.483e-1327.59Cytoplasmic FMR1-interacting protein 2 OS=Mus musc... [more]
CYFP2_HUMAN5.483e-1327.59Cytoplasmic FMR1-interacting protein 2 OS=Homo sap... [more]
CYFP2_PONAB7.160e-1327.59Cytoplasmic FMR1-interacting protein 2 OS=Pongo ab... [more]
CYFIP_DROPS7.917e-1228.80Cytoplasmic FMR1-interacting protein OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionC03003G07SK OF2 Citrus clementina cDNA clone C03003G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291077 ID=CX291077; Name=CX291077; organism=Citrus clementina; type=EST; length=546bp
CATGAATTGCTTTCCAAGGATCTTTCAATAGATTCATTCAGGCTCATCTT
GAATGAAATGCAAGAAAACATATCCCTGGTGTCATTTTCTAGTCGACTTG
CTTCTCAGATTTGGTCAGAGATGCAAAGCGATTTCTTGCCGAATTTTATC
CTTTGTAATACTACTCAGCGTTTCATCCGATCATCAAAAGTTCCTCTTGC
TTCTGTTCAAAAGCCTTCTGTTCCCTATGCCAAGCCTAGTTTCTACTGCG
GTACTCAAGATTTGAACTCTGCACATCAAAGCTTTGCACGTTTGCATAGT
GGATTCTTTGGAATACCCCACATGTTTTCTATTGTTCGGCTTCTTGGATC
CAGATCATTGCCTTGGCTTATCCGAGCACTACTAGATCATATGTCAAATA
AGATAACAACACTGGAACCGTTGATTATGGGGTTGCAAGAAACCTTGCCA
AAGTCTATTGGTCTACTGCATTTTGATAGTGGTGTAACAGGTTGTATGAG
GCTTGTTAAAGAACAACTTAATTGGGGAACAAAGTCTGAGCTCAAA
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