CX291080

Overview
NameCX291080
Unique NameCX291080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length523
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12667 contig Ccv1_Contig12667:467..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_DICDI (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Dictyostelium discoideum GN=ndufv1 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 2.050e-75
Identity = 131/170 (77.06%), Postives = 148/170 (87.06%), Query Frame = 2
Query:   14 SARGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            +++ RP YLV+NADE EPGTCKDREIMRHDPHKL+EGCL+AG  MRA AAYIYIRGE+  E K LE+A  EAY AGL+G+NACG+GY FDV++H GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA AGLYGCPTTVTNVETVAV+P ILRRG  WFA FGR  N+GTK
Sbjct:  122 TSKDRPQYLVINADEGEPGTCKDREIMRHDPHKLIEGCLLAGFAMRACAAYIYIRGEFHYEAKVLEQAIDEAYKAGLIGENACGTGYKFDVYVHRGAGAYICGEETALIESIEGKQGKPRLKPPFPAMAGLYGCPTTVTNVETVAVAPTILRRGGAWFASFGRPKNAGTK 291          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_HUMAN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Homo sapiens GN=NDUFV1 PE=1 SV=4)

HSP 1 Score: 279.641 bits (714), Expect = 5.964e-75
Identity = 131/167 (78.44%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKLLEGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFAGFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_PANTR (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pan troglodytes GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 1.329e-74
Identity = 130/167 (77.84%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFAGFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_PONPY (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Pongo pygmaeus GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.735e-74
Identity = 130/167 (77.84%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFAGFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_MACFA (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Macaca fascicularis GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 1.735e-74
Identity = 130/167 (77.84%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFAGFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_GORGO (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFV1 PE=2 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 2.960e-74
Identity = 129/167 (77.25%), Postives = 144/167 (86.23%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WF+GFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREILRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFSGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_MOUSE (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Mus musculus GN=Ndufv1 PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 3.866e-74
Identity = 130/167 (77.84%), Postives = 143/167 (85.63%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREIMRHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGS YDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFAGFGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSDYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGTWFAGFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NDUV1_BOVIN (NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial OS=Bos taurus GN=NDUFV1 PE=1 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 1.125e-73
Identity = 129/167 (77.25%), Postives = 143/167 (85.63%), Query Frame = 2
Query:   23 GRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            GRP YLVVNADE EPGTCKDREI+RHDPHKL+EGCL+ G  M A AAYIYIRGE+ NE  NL+ A +EAY AGL+GKNACGSGYDFDV +  GAGAYICGEETAL+ES+EGKQGKPRLKPPFPA+ G++GCPTTV NVETVAVSP I RRG  WFA FGR+ NSGTK
Sbjct:  108 GRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTK 274          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NUOF_RHOCA (NADH-quinone oxidoreductase subunit F OS=Rhodobacter capsulatus GN=nuoF PE=3 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 5.582e-73
Identity = 127/173 (73.41%), Postives = 145/173 (83.82%), Query Frame = 2
Query:    5 VPNSARGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            +P  + GRPS+LV+NADESEPGTCKDREIMRHDPH L+EG LIAG  M A AAYIYIRGEYV E++ L+ A  E Y AGL+GKNAC S YDFDV++H+GAGAYICGEETALLESLEGK+G PR+KPPFPA +GLYGCPTTV NVE++AV P ILRRG  WFAG GR NN+G K
Sbjct:   69 MPKQSDGRPSFLVINADESEPGTCKDREIMRHDPHTLIEGALIAGFAMGARAAYIYIRGEYVREKEALQAAIDECYEAGLIGKNACRSDYDFDVYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGSGLYGCPTTVNNVESIAVVPTILRRGGAWFAGIGRPNNTGVK 241          
BLAST of CX291080 vs. ExPASy Swiss-Prot
Match: NQO1_PARDE (NADH-quinone oxidoreductase chain 1 OS=Paracoccus denitrificans GN=nqo1 PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 2.770e-72
Identity = 125/173 (72.25%), Postives = 145/173 (83.82%), Query Frame = 2
Query:    5 VPNSARGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAGVGMRASAAYIYIRGEYVNERKNLERARQEAYAAGLLGKNACGSGYDFDVHIHYGAGAYICGEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVTNVETVAVSPIILRRGPDWFAGFGRKNNSGTK 523
            +P  + GRPSYLV+NADESEP TCKDREIMRHDPH L+EG LIA   M A AAYIYIRGE++ ER+ L+ A  E Y AGLLG+NA GSG+DFD+++H+GAGAYICGEETALLESLEGK+G PR+KPPFPA AGLYGCPTTV NVE++AV P ILRRG +WFA FGR NN+G K
Sbjct:   69 MPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVK 241          
The following BLAST results are available for this feature:
BLAST of CX291080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
NDUV1_DICDI2.050e-7577.06NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_HUMAN5.964e-7578.44NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PANTR1.329e-7477.84NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_PONPY1.735e-7477.84NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MACFA1.735e-7477.84NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_GORGO2.960e-7477.25NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_MOUSE3.866e-7477.84NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NDUV1_BOVIN1.125e-7377.25NADH dehydrogenase [ubiquinone] flavoprotein 1, mi... [more]
NUOF_RHOCA5.582e-7373.41NADH-quinone oxidoreductase subunit F OS=Rhodobact... [more]
NQO1_PARDE2.770e-7272.25NADH-quinone oxidoreductase chain 1 OS=Paracoccus ... [more]

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Properties
Property NameValue
Genbank descriptionC03003G10SK OF2 Citrus clementina cDNA clone C03003G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291080 ID=CX291080; Name=CX291080; organism=Citrus clementina; type=EST; length=523bp
GCTCGTGCCGAATTCGGCACGAGGCCGTCCTTCGTATCTTGTTGTCAATG
CTGATGAAAGTGAACCTGGAACCTGTAAAGACAGGGAAATTATGCGGCAT
GATCCACATAAGTTGTTGGAGGGCTGCTTGATTGCTGGCGTAGGAATGAG
GGCTTCTGCTGCTTACATTTACATAAGGGGTGAATATGTAAATGAACGTA
AAAACCTTGAAAGAGCGAGGCAAGAAGCTTATGCTGCTGGATTGTTGGGC
AAGAATGCCTGCGGATCTGGTTATGATTTTGATGTGCATATCCACTATGG
TGCTGGTGCTTATATTTGTGGTGAAGAGACAGCTCTTTTGGAAAGCCTTG
AAGGTAAACAGGGGAAACCAAGATTGAAGCCTCCTTTCCCTGCTAATGCA
GGTTTATATGGTTGTCCCACCACTGTCACCAATGTGGAAACTGTGGCCGT
TTCTCCCATCATTTTAAGGCGTGGACCGGACTGGTTTGCTGGTTTTGGCA
GGAAGAACAATTCTGGTACAAAA
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