CX291087

Overview
NameCX291087
Unique NameCX291087
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length414
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig340 contig Ccv1_Contig340:1..414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291087 vs. ExPASy Swiss-Prot
Match: DEGP1_ARATH (Protease Do-like 1, chloroplastic OS=Arabidopsis thaliana GN=DEGP1 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 4.971e-47
Identity = 93/103 (90.29%), Postives = 96/103 (93.20%), Query Frame = -2 
Query:  105 LGIKFAPDQSVEQLGVSGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPKPDET 413
            LGIKFAPDQSVEQLGVSGVLVLDAPP+GPAGKAGL STKRD YGRL+LGDIITSVNG KVSNGSDLYRILDQCKVGDEV VEVLRGD KEKI V LEPKPDE+
Sbjct:  337 LGIKFAPDQSVEQLGVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYRILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 439
[Close]
BLAST of CX291087 vs. ExPASy Swiss-Prot
Match: DEGP8_ARATH (Protease Do-like 8, chloroplastic OS=Arabidopsis thaliana GN=DEGP8 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.907e-14
Identity = 42/100 (42.00%), Postives = 62/100 (62.00%), Query Frame = -2 
Query:  117 LGIKFAPDQSVEQLGV-SGVLVLDAPPNGPAGKAGLLSTKRDAYGRLILGDIITSVNGKKVSNGSDLYRILDQCKVGDEVIVEVLRGDQKEKIPVKLEPK 413
            + I+ APD    QL V +G LVL  P    A KAGL  T R   G ++LGDII +V+ K V N ++L +ILD+  VGD+V +++ RG++  ++ + LE K
Sbjct:  347 INIELAPDPVANQLNVRNGALVLQVPGKSLAEKAGLHPTSRGFAGNIVLGDIIVAVDDKPVKNKAELMKILDEYSVGDKVTLKIKRGNEDLELKISLEEK 446
The following BLAST results are available for this feature:
BLAST of CX291087 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DEGP1_ARATH4.971e-4790.29Protease Do-like 1, chloroplastic OS=Arabidopsis t... [more]
DEGP8_ARATH1.907e-1442.00Protease Do-like 8, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionC03003H06SK OF2 Citrus clementina cDNA clone C03003H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291087 ID=CX291087; Name=CX291087; organism=Citrus clementina; type=EST; length=414bp
TTTTTTTTTTTTTTTTGGTAAAACAATTGATGCACAACTACAATGGCATT
TTTATGGTATATGTGCTACACTTAAATATACAAACCCAACCTTTTGGCAT
ATTAAGTCTCATCTGGTTTTGGTTCAAGTTTTACCGGAATCTTCTCCTTC
TGATCTCCGCGCAATACCTCAACAATCACCTCATCTCCAACTTTACATTG
GTCAAGAATTCTGTACAAGTCGCTGCCATTGGAGACCTTTTTTCCATTCA
CAGATGTTATGATGTCACCCAAAATAAGTCTGCCATAGGCATCGCGTTTG
GTTGATAGCAAGCCTGCTTTGCCAGCAGGACCGTTTGGAGGAGCATCTAA
GACGAGCACTCCACTTACACCTAACTGCTCCACAGATTGATCAGGTGCGA
ACTTAATCCCTAAA
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