CX291103

Overview
NameCX291103
Unique NameCX291103
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length582
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11016 contig Ccv1_Contig11016:824..1405. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: RIK_ARATH (Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.679e-40
Identity = 95/170 (55.88%), Postives = 117/170 (68.82%), Query Frame = 2
Query:   80 DQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAAILTSTVNLTSVPLAPS---VPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSG 580
            DQYINHIMNETGATV+LRGRGSG+ E   G+E   PLHL LS +NPKS+++AKRLAENL+DTIS E GASRVSS KVY AVPPPQQL++G  G   E +    +  ++TS + +T+ P A S   V   T++Y Q  ++QS GI N         G  QPV+ GGTSYSG
Sbjct:  218 DQYINHIMNETGATVVLRGRGSGSLENQHGDEAQLPLHLLLSGSNPKSIDDAKRLAENLMDTISVEFGASRVSSSKVYGAVPPPQQLISGAPGSDQENQNLISTYGLMTS-IPITAPPYAVSSFPVTPATSLYPQFPVMQSLGISNG--------GPSQPVA-GGTSYSG 377          
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: RIK_MAIZE (Protein RIK OS=Zea mays PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.020e-31
Identity = 82/170 (48.24%), Postives = 102/170 (60.00%), Query Frame = 2
Query:   80 DQYINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLN--AGSAAILTSTVNLTSV-PLAPSVPGVTTVYSQGMMLQSGGILNSVQPQQNIVGYPQPVSTGGTSYSG 580
            DQYINHIM ETG TV+LRG+ S N      E   QPLHL+L+S + K+LE AK LAENLLDT++AE GASR+SS KVY AVPPPQQLL G+   G +  ++   G   +  +T +  S   +AP V    TV       QSG    S  P  + + YP P + GG  YSG
Sbjct:  244 DQYINHIMKETGVTVVLRGKDSENLGSCHSEASQQPLHLYLTSMHLKNLEAAKVLAENLLDTVAAEFGASRISSSKVYGAVPPPQQLLAGVDTSGTKSDVHYIVGPNVLSGATHSFASTGVIAPVVAPAVTV-------QSGAPTYSGVPLPSNMAYPIPPANGGAFYSG 406          
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: K0907_XENLA (UPF0469 protein KIAA0907 homolog OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.412e-11
Identity = 53/171 (30.99%), Postives = 72/171 (42.11%), Query Frame = 2
Query:   86 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE-----------------CGASRVSSCKVYNAVPPPQQLLTGIQGFGNEQKLNAGSAAILTSTVNLTSVP--------LAPSVPGVTTVYSQGMMLQSGGILNSVQPQ 523
            Y+ HI  ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T+ AE                     ++SS  +     PP    TG           A     + ST   + VP        +A  VP V T Y     +Q  G+   V PQ
Sbjct:  264 YLQHIQMETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAEYNRFVNQITSTAPMTGYAQPPQISSVSMQPQYYPPNGYQTGFPVVQPPAPQPAVQVPYVVSTPIASPVPPPPGVVPNMAAPVPAVPTCYPI-PQVQPPGLSLPVPPQ 433          
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: K0907_MOUSE (UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa0907 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   86 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 331
            Y+ HI  ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T+ AE   SR  + ++  AVP P
Sbjct:  261 YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE--YSRFVN-QINTAVPLP 339          
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: K0907_HUMAN (UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA0907 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.820e-11
Identity = 37/82 (45.12%), Postives = 51/82 (62.20%), Query Frame = 2
Query:   86 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAECGASRVSSCKVYNAVPPP 331
            Y+ HI  ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T+ AE   SR  + ++  AVP P
Sbjct:  259 YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE--YSRFVN-QINTAVPLP 337          
BLAST of CX291103 vs. ExPASy Swiss-Prot
Match: K0907_CHICK (UPF0469 protein KIAA0907 homolog OS=Gallus gallus GN=RCJMB04_7l9 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.601e-11
Identity = 31/64 (48.44%), Postives = 42/64 (65.62%), Query Frame = 2
Query:   86 YINHIMNETGATVLLRGRGSGNSEGLQGEEVHQPLHLFLSSNNPKSLEEAKRLAENLLDTISAE 277
            Y+ HI  ETGA V LRG+GSG  E   G E  +P+++++S   P+ L  AK+L ENLL T+ AE
Sbjct:  269 YLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKKLCENLLQTVHAE 332          
The following BLAST results are available for this feature:
BLAST of CX291103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RIK_ARATH2.679e-4055.88Protein RIK OS=Arabidopsis thaliana GN=RIK PE=1 SV... [more]
RIK_MAIZE1.020e-3148.24Protein RIK OS=Zea mays PE=1 SV=1[more]
K0907_XENLA3.412e-1130.99UPF0469 protein KIAA0907 homolog OS=Xenopus laevis... [more]
K0907_MOUSE5.820e-1145.12UPF0469 protein KIAA0907 OS=Mus musculus GN=Kiaa09... [more]
K0907_HUMAN5.820e-1145.12UPF0469 protein KIAA0907 OS=Homo sapiens GN=KIAA09... [more]
K0907_CHICK7.601e-1148.44UPF0469 protein KIAA0907 homolog OS=Gallus gallus ... [more]
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Properties
Property NameValue
Genbank descriptionC03004B04SK OF2 Citrus clementina cDNA clone C03004B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291103 ID=CX291103; Name=CX291103; organism=Citrus clementina; type=EST; length=582bp
CCCCGGGCTGCAGGCTCGTGCCGAATTCGGCACGAGGGAGAGACTGTTTT
TCTGTTGGTGCTTCCGTTTGTACATGCAGGACCAGTATATAAATCACATT
ATGAATGAAACAGGAGCAACTGTCTTACTAAGAGGGCGTGGTTCTGGAAA
CTCTGAAGGCCTGCAAGGCGAAGAAGTGCATCAACCATTGCATTTATTCT
TGTCCAGTAATAATCCTAAAAGCTTGGAAGAAGCAAAGCGTCTGGCAGAA
AATCTGTTGGATACAATCAGTGCAGAGTGTGGTGCCTCCAGGGTTTCATC
ATGTAAAGTCTATAACGCTGTCCCACCCCCACAGCAGTTGTTGACTGGCA
TTCAGGGTTTTGGCAATGAGCAAAAGTTGAATGCAGGTTCTGCTGCCATA
TTGACATCTACAGTGAACTTAACATCAGTTCCACTGGCTCCTTCAGTTCC
TGGAGTTACTACTGTCTATTCTCAAGGCATGATGTTACAGTCCGGAGGAA
TATTGAACAGTGTGCAGCCACAACAAAATATAGTTGGATATCCTCAGCCT
GTATCAACTGGAGGAACAAGCTATAGTGGATA
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