CX291115

Overview
NameCX291115
Unique NameCX291115
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length583
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291115 vs. ExPASy Swiss-Prot
Match: GOGC6_ARATH (Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2)

HSP 1 Score: 273.092 bits (697), Expect = 7.069e-73
Identity = 134/196 (68.37%), Postives = 161/196 (82.14%), Query Frame = -2 
Query:    1 VESQWAPVAVRCAALRCISDIIAAHPKNRDVLASKVLGEEPQVEAALNSILRIILRTSSMQEFLAADRIFNSFCEKNPDGQAMLTSTLIPQPQSMSHAPLEEDVNMSFGSMLIRGLTLGESDGDLEVCCRAASVLSHILMDNLQCKERVLRIELEAPMPSLGAAEPLMHRMVRYLALASSMKTKDGTGKAG--YIQ 582
            VESQWAPVAVRC   +CI D+I  HPKNRD+LASKVLGE+ QVE ALNSILRIIL+TSS+QEF+AAD +F +FCEKN +GQ ML STLIPQP   S   LE+DV+MSFGSML+RGL  GE+DGDLE CCRAAS+LSH++ DNL+CKE+ L+I LE+PMPS+G  EPL  R+VRYLA+ASSMK+K+ +   G  YIQ
Sbjct:  328 VESQWAPVAVRCMTFKCIGDLIDGHPKNRDILASKVLGEDRQVEPALNSILRIILQTSSIQEFVAADYVFKTFCEKNTEGQTMLASTLIPQPHPTSRDHLEDDVHMSFGSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLFQRIVRYLAVASSMKSKEKSSTLGKSYIQ 523
The following BLAST results are available for this feature:
BLAST of CX291115 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
GOGC6_ARATH7.069e-7368.37Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 ... [more]
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Properties
Property NameValue
Genbank descriptionC03004C07SK OF2 Citrus clementina cDNA clone C03004C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291115 ID=CX291115; Name=CX291115; organism=Citrus clementina; type=EST; length=583bp
TTGAATGTACCCTGCTTTACCTGTGCCATCTTTAGTTTTCATCGACGAAG
CAAGAGCCAAGTATCTCACCATACGGTGCATCAGTGGCTCTGCAGCTCCC
AAAGATGGCATAGGTGCCTCAAGCTCAATTCGTAGAACCCGTTCTTTGCA
TTGCAAATTGTCCATCAGTATGTGAGAGAGTACGCTAGCAGCTCTGCAAC
AAACCTCAAGATCACCATCACTTTCACCCAAAGTAAGACCACGTATCAGC
ATGCTTCCAAATGACATGTTCACATCCTCCTCGAGGGGAGCATGACTCAT
TGATTGTGGTTGAGGAATTAAAGTGGAAGTTAACATTGCTTGGCCATCTG
GATTTTTCTCACAAAAGCTGTTAAAGATACGGTCGGCTGCAAGAAACTCT
TGCATACTAGATGTCCTCAAAATGATTCGCAGAATAGAATTCAGAGCAGC
TTCAACTTGTGGTTCCTCACCAAGAACTTTGCTTGCAAGGACATCACGGT
TTTTGGGATGTGCAGCAATTATATCACTAATGCACCGCAATGCCGCACAA
CGGACAGCTACAGGAGCCCACTGACTCTCAACG
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