CX291153 | Citrus Genome Database

Overview


Name	CX291153
Unique Name	CX291153
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	580

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig10820	contig	Ccv1_Contig10820:7..586.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_XENLA (Synaptic vesicle 2-related protein OS=Xenopus laevis GN=svop PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.311e-17
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG +SD YGRR
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSMLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMASSSLWGNVSDQYGRR 150

HSP 2 Score: 32.3426 bits (72), Expect = 4.311e-17
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:  505 TFVAGLLSAFAPNYISLLILRGLAG 579
            T   G+LSAFAP Y  +L+LRGL G
Sbjct:  160 TLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_PONAB (Synaptic vesicle 2-related protein OS=Pongo abelii GN=SVOP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.604e-17
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRK 150

HSP 2 Score: 32.7278 bits (73), Expect = 5.604e-17
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  499 LVTFVAGLLSAFAPNYISLLILRGLAG 579
            L T   G+LSAFAP Y  +L+LRGL G
Sbjct:  158 LWTLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_HUMAN (Synaptic vesicle 2-related protein OS=Homo sapiens GN=SVOP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.604e-17
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRK 150

HSP 2 Score: 32.7278 bits (73), Expect = 5.604e-17
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  499 LVTFVAGLLSAFAPNYISLLILRGLAG 579
            L T   G+LSAFAP Y  +L+LRGL G
Sbjct:  158 LWTLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_BOVIN (Synaptic vesicle 2-related protein OS=Bos taurus GN=SVOP PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 5.604e-17
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFGKFQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+
Sbjct:   68 FMVEDAVEAIGFGKFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFVGMMSSSTLWGNISDQYGRK 150

HSP 2 Score: 32.7278 bits (73), Expect = 5.604e-17
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  499 LVTFVAGLLSAFAPNYISLLILRGLAG 579
            L T   G+LSAFAP Y  +L+LRGL G
Sbjct:  158 LWTLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_MOUSE (Synaptic vesicle 2-related protein OS=Mus musculus GN=Svop PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.600e-16
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRK 150

HSP 2 Score: 32.7278 bits (73), Expect = 1.600e-16
Identity = 16/27 (59.26%), Postives = 19/27 (70.37%), Query Frame = 1

Query:  499 LVTFVAGLLSAFAPNYISLLILRGLAG 579
            L T   G+LSAFAP Y  +L+LRGL G
Sbjct:  158 LWTLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: YOU1_CAEEL (Putative transporter ZK637.1 OS=Caenorhabditis elegans GN=ZK637.1 PE=3 SV=5)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/95 (41.05%), Postives = 58/95 (61.05%), Query Frame = 3

Query:  132 DHRLVYTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRKVFFFIT 416
            D    +T+DEA+  +GFG+FQ      +G+ W ++AME+M+LS + PA+  EWG        +TT VF+GM++ +  WG I D +GRRK   F T
Sbjct:   62 DSEKTFTVDEAVEALGFGRFQLKLSILTGMAWMADAMEMMLLSLISPALACEWGISSVQQALVTTCVFSGMMLSSTFWGKICDRFGRRKGLTFST 156

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOP_RAT (Synaptic vesicle 2-related protein OS=Rattus norvegicus GN=Svop PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.079e-16
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRR 395
            + +++A+  +GFG+FQ      +GL W ++AME+MILS + P +  EW         +T+VVF GM+  +  WG ISD YGR+
Sbjct:   68 FMVEDAVEAIGFGRFQWKLSVLTGLAWMADAMEMMILSILAPQLHCEWRLPSWQVALLTSVVFIGMMSSSTLWGNISDQYGRK 150

HSP 2 Score: 32.3426 bits (72), Expect = 2.079e-16
Identity = 15/25 (60.00%), Postives = 18/25 (72.00%), Query Frame = 1

Query:  505 TFVAGLLSAFAPNYISLLILRGLAG 579
            T   G+LSAFAP Y  +L+LRGL G
Sbjct:  160 TLYYGILSAFAPVYSWILVLRGLVG 184

[Close]

BLAST of CX291153 vs. ExPASy Swiss-Prot
Match: SVOPL_HUMAN (Putative transporter SVOPL OS=Homo sapiens GN=SVOPL PE=2 SV=2)

HSP 1 Score: 62.3882 bits (150), Expect = 1.234e-11
Identity = 29/85 (34.12%), Postives = 50/85 (58.82%), Query Frame = 3

Query:  147 YTLDEALTFMGFGKFQGLALAYSGLGWFSEAMEVMILSFVGPAVKSEWGXXXXXXXXITTVVFAGMLVGAYSWGLISDIYGRRKV 401
            +T+++A+  +GFG+F        G     EAME+M+++ V P ++ EW         +TT+VF G +V +  +GL++D YGR K+
Sbjct:   32 FTVEDAVETIGFGRFHIALFLIMGSTGVVEAMEIMLIAVVSPVIRCEWQLENWQVALVTTMVFFGYMVFSILFGLLADRYGRWKI 116

HSP 2 Score: 26.1794 bits (56), Expect = 1.234e-11
Identity = 16/41 (39.02%), Postives = 25/41 (60.98%), Query Frame = 1

Query:  469 FSRMSILGGALVTFVAG----LLSAFAPNYISLLILRGLAG 579
            + R  IL   L++F+ G    LL++FAP+YI  + LR + G
Sbjct:  111 YGRWKIL---LISFLWGAYFSLLTSFAPSYIWFVFLRTMVG 148

The following BLAST results are available for this feature:

BLAST of CX291153 vs. ExPASy Swiss-Prot

BLAST of CX291153 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8


Match Name	E-value	Identity	Description
SVOP_XENLA	4.311e-17	40.96	Synaptic vesicle 2-related protein OS=Xenopus laev...	[more]
SVOP_PONAB	5.604e-17	40.96	Synaptic vesicle 2-related protein OS=Pongo abelii...	[more]
SVOP_HUMAN	5.604e-17	40.96	Synaptic vesicle 2-related protein OS=Homo sapiens...	[more]
SVOP_BOVIN	5.604e-17	40.96	Synaptic vesicle 2-related protein OS=Bos taurus G...	[more]
SVOP_MOUSE	1.600e-16	39.76	Synaptic vesicle 2-related protein OS=Mus musculus...	[more]
YOU1_CAEEL	2.040e-16	41.05	Putative transporter ZK637.1 OS=Caenorhabditis ele...	[more]
SVOP_RAT	2.079e-16	39.76	Synaptic vesicle 2-related protein OS=Rattus norve...	[more]
SVOPL_HUMAN	1.234e-11	34.12	Putative transporter SVOPL OS=Homo sapiens GN=SVOP...	[more]

Properties


Property Name	Value
Genbank description	C03004F11SK OF2 Citrus clementina cDNA clone C03004F11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291153 ID=CX291153; Name=CX291153; organism=Citrus clementina; type=EST; length=580bp
ATTTAGAATTTATGTTTTTCATATGATTTTCTGCTGTATAGCTTTAAGAA
TTGAGCTAGGACGTGCCCGTGACTCTGTGAAGGCAATAATTTCAAATTAA
TCTGCATGATACTTGCTATTCAAAGATGGATGATCATAGACTTGTGTACA
CGCTGGATGAAGCACTTACATTCATGGGGTTTGGGAAGTTCCAAGGTCTC
GCGCTTGCTTATTCTGGGCTCGGTTGGTTTTCAGAAGCAATGGAGGTTAT
GATTCTCTCCTTTGTGGGACCTGCAGTGAAGTCTGAGTGGGGATTGTCCT
CAAGTGAAGAGAGCCTTATAACAACTGTTGTTTTTGCTGGAATGTTAGTT
GGCGCATATTCATGGGGCCTTATATCTGACATATATGGAAGAAGGAAGGT
TTTCTTCTTTATTACATCCTGATATGTGCCCCAAATTGCTCCTTCAACCA
ATGTATTTTATTTTTGCATTTTCCAGGATGAGTATCCTTGGTGGAGCTTT
AGTGACTTTTGTAGCTGGGTTATTAAGTGCTTTTGCCCCTAACTACATAT
CATTGTTGATTCTTCGTGGTTTGGCTGGTG