CX291156

Overview
NameCX291156
Unique NameCX291156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length348
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig940 contig Ccv1_Contig940:201..548. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
[Close]
BLAST of CX291156 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.085e-25
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 3 
Query:    3 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 173
            GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:   43 GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99
The following BLAST results are available for this feature:
BLAST of CX291156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 107
Match NameE-valueIdentityDescription
H4_SILLA3.085e-25100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA3.085e-25100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE3.085e-25100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE3.085e-25100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR3.085e-25100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL3.085e-25100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ3.085e-25100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH3.085e-25100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT3.085e-25100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT3.085e-25100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC03004G02SK OF2 Citrus clementina cDNA clone C03004G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291156 ID=CX291156; Name=CX291156; organism=Citrus clementina; type=EST; length=348bp
GTGGAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGTC
CTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA
GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCA
AGAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGGT
TCTGGAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAGA
TGGGGCTCTTAGTAGTTTGTTATTAGGTTGCTGCTTTGTAATTCTATCAA
GTTAAATCTTATCTTTATATTTGAGGCAAAAAAAAAAAAAAAAAAAAA
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