CX291162

Overview
NameCX291162
Unique NameCX291162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length661
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291162_ssr56 microsatellite CX291162_ssr56:56..65. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: APK1B_ARATH (Protein kinase APK1B, chloroplastic OS=Arabidopsis thaliana GN=APK1B PE=2 SV=2)

HSP 1 Score: 214.927 bits (546), Expect = 2.921e-55
Identity = 107/150 (71.33%), Postives = 122/150 (81.33%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVSSDGNDMXXXXXXXXXXXVPPTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MGICLSA+IKA SP   G S KY+SS+ ND            +   PR+EGEIL+SPNLKSF+F++LK ATRNFRPDSVLGEGGFGSVFKGWIDE +  A+KPGTG+VIAVK+LNQDG+QGH+EWLAEVNYLGQ  HPNLVKLIGYCLED
Sbjct:    1 MGICLSAQIKAVSP---GASPKYMSSEANDSLGSKSSSVS--IRTNPRTEGEILQSPNLKSFTFAELKAATRNFRPDSVLGEGGFGSVFKGWIDEQTLTASKPGTGVVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHPNLVKLIGYCLED 145          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: APK1A_ARATH (Protein kinase APK1A, chloroplastic OS=Arabidopsis thaliana GN=APK1A PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.603e-53
Identity = 104/150 (69.33%), Postives = 122/150 (81.33%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVSSDGNDMXXXXXXXXXXXVPPTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MGICLSA++KAES   +G S+KY   D  D+           V P+PR+EGEIL+SPNLKSFSF++LK+ATRNFRPDSVLGEGGFG VFKGWIDE S  A++PGTG+VIAVK+LNQDG+QGH+EWLAEVNYLGQ  H +LVKLIGYCLED
Sbjct:    1 MGICLSAQVKAES---SGASTKY---DAKDIGSLGSKASSVSVRPSPRTEGEILQSPNLKSFSFAELKSATRNFRPDSVLGEGGFGCVFKGWIDEKSLTASRPGTGLVIAVKKLNQDGWQGHQEWLAEVNYLGQFSHRHLVKLIGYCLED 144          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: NAK_ARATH (Probable serine/threonine-protein kinase NAK OS=Arabidopsis thaliana GN=NAK PE=2 SV=2)

HSP 1 Score: 197.208 bits (500), Expect = 6.302e-50
Identity = 98/150 (65.33%), Postives = 117/150 (78.00%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVSSDGNDMXXXXXXXXXXXVPPTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MG C S RIK +   +T +SSK++S DG+                 PR+EGEIL++ NLK+FS S+LK+ATRNFRPDSV+GEGGFG VFKGWIDE S A +KPGTG+VIAVKRLNQ+GFQGH+EWLAE+NYLGQL HPNLVKLIGYCLE+
Sbjct:    1 MGGCFSNRIKTDIASSTWLSSKFLSRDGSKGSSTASFSYM------PRTEGEILQNANLKNFSLSELKSATRNFRPDSVVGEGGFGCVFKGWIDESSLAPSKPGTGIVIAVKRLNQEGFQGHREWLAEINYLGQLDHPNLVKLIGYCLEE 144          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: BIK1_ARATH (Serine/threonine-protein kinase BIK1 OS=Arabidopsis thaliana GN=BIK1 PE=1 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 7.972e-45
Identity = 90/150 (60.00%), Postives = 108/150 (72.00%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVSSDGNDMXXXXXXXXXXXVPPTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MG C S+R+KA+   N   S  Y  S  +             V    ++EGEIL S  +KSF+F++LK ATRNFRPDSV+GEGGFG VFKGW+DE +   TKPGTG+VIAVK+LNQ+GFQGH+EWL E+NYLGQL HPNLVKLIGYCLED
Sbjct:    1 MGSCFSSRVKADIFHNGKSSDLYGLSLSS-------RKSSSTVAAAQKTEGEILSSTPVKSFTFNELKLATRNFRPDSVIGEGGFGCVFKGWLDESTLTPTKPGTGLVIAVKKLNQEGFQGHREWLTEINYLGQLSHPNLVKLIGYCLED 143          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: APK2B_ARATH (Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.964e-43
Identity = 78/105 (74.29%), Postives = 94/105 (89.52%), Query Frame = 2
Query:  344 PTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLE 658
            PTPR+EGEIL SPNLK+F+F++LK ATRNFRPDS+LGEGGFG VFKGWID  +  A+KPG+G+V+AVK+L  +G+QGHKEWL EVNYLGQL HPNLVKL+GYC+E
Sbjct:   54 PTPRTEGEILSSPNLKAFTFNELKNATRNFRPDSLLGEGGFGYVFKGWIDGTTLTASKPGSGIVVAVKKLKTEGYQGHKEWLTEVNYLGQLSHPNLVKLVGYCVE 158          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: Y3545_ARATH (Probable receptor-like protein kinase At3g55450 OS=Arabidopsis thaliana GN=At3g55450 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.347e-41
Identity = 85/150 (56.67%), Postives = 107/150 (71.33%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVSSDGNDMXXXXXXXXXXXVPPTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MG CLS+R+  +S  ++G+   ++SS  +                  ++EGEIL S  +KSFSF++LK ATRNFR DSV+GEGGFG VF+GW+DE +   TK  +G+VIAVKRLN DGFQGH+EWL E+NYLGQL HPNLVKLIGYCLED
Sbjct:    1 MGSCLSSRVLNKS--SSGLDDLHLSSCKSSSSATAH-----------KTEGEILSSTTVKSFSFNELKLATRNFRSDSVVGEGGFGCVFRGWLDETTLTPTKSSSGLVIAVKRLNPDGFQGHREWLTEINYLGQLSHPNLVKLIGYCLED 137          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: APK2A_ARATH (Protein kinase 2A, chloroplastic OS=Arabidopsis thaliana GN=APK2A PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.032e-40
Identity = 74/105 (70.48%), Postives = 91/105 (86.67%), Query Frame = 2
Query:  344 PTPRSEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLE 658
            PT R+EGEIL SPNLK+F+F++LK AT+NFR D++LGEGGFG VFKGWID+ S  A++PG+G+V+AVK+L  +GFQGHKEWL EVNYLGQL HPNLV L+GYC E
Sbjct:   57 PTLRTEGEILSSPNLKAFTFNELKNATKNFRQDNLLGEGGFGCVFKGWIDQTSLTASRPGSGIVVAVKQLKPEGFQGHKEWLTEVNYLGQLSHPNLVLLVGYCAE 161          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: CX32_ARATH (Probable serine/threonine-protein kinase Cx32, chloroplastic OS=Arabidopsis thaliana GN=At4g35600 PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.560e-32
Identity = 71/163 (43.56%), Postives = 100/163 (61.35%), Query Frame = 2
Query:  212 MGICLSARIKAESPFNTGVSSKYVS---SDGNDMXXXXXXXXXXXVPPTPR----------SEGEILRSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            MG C+S    + SP  TG+ S   +   S+G +            V    +            G++L SPNLK ++F DLKTAT+NF+PDS+LG+GGFG V++GW+D  + A ++ G+GM++A+KRLN +  QG  EW +EVN+LG L H NLVKL+GYC ED
Sbjct:    1 MGACISF-FSSSSPSKTGLHSHATTNNHSNGTEFSSTTGATTNSSVGQQSQFSDISTGIISDSGKLLESPNLKVYNFLDLKTATKNFKPDSMLGQGGFGKVYRGWVDATTLAPSRVGSGMIVAIKRLNSESVQGFAEWRSEVNFLGMLSHRNLVKLLGYCRED 162          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: Y5707_ARATH (Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.463e-22
Identity = 54/108 (50.00%), Postives = 74/108 (68.52%), Query Frame = 2
Query:  344 PTPRSEGEIL--RSPNLKSFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLED 661
            P+PRS  ++   R  NL+ FS+ +L  AT  F    V+GEGGFG V+KG I  +  ++  P   +V+A+K+LN+ G QGHK+WLAEV +LG + HPN+VKLIGYC ED
Sbjct:   55 PSPRSIKDLYTEREQNLRVFSYEELSKATYVFSRKLVIGEGGFGIVYKGKILSNGDSSDPP---LVVAIKKLNRQGLQGHKQWLAEVQFLGVVNHPNVVKLIGYCSED 159          
BLAST of CX291162 vs. ExPASy Swiss-Prot
Match: PBS1_ARATH (Serine/threonine-protein kinase PBS1 OS=Arabidopsis thaliana GN=PBS1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.405e-19
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 2
Query:  392 SFSFSDLKTATRNFRPDSVLGEGGFGSVFKGWIDEHSFAATKPGTGMVIAVKRLNQDGFQGHKEWLAEVNYLGQLYHPNLVKLIGYCLE 658
            +F+F +L  AT NF PD+ LGEGGFG V+KG +D          TG V+AVK+L+++G QG++E+L EV  L  L+HPNLV LIGYC +
Sbjct:   73 TFAFRELAAATMNFHPDTFLGEGGFGRVYKGRLDS---------TGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCAD 152          
The following BLAST results are available for this feature:
BLAST of CX291162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
APK1B_ARATH2.921e-5571.33Protein kinase APK1B, chloroplastic OS=Arabidopsis... [more]
APK1A_ARATH1.603e-5369.33Protein kinase APK1A, chloroplastic OS=Arabidopsis... [more]
NAK_ARATH6.302e-5065.33Probable serine/threonine-protein kinase NAK OS=Ar... [more]
BIK1_ARATH7.972e-4560.00Serine/threonine-protein kinase BIK1 OS=Arabidopsi... [more]
APK2B_ARATH1.964e-4374.29Protein kinase 2B, chloroplastic OS=Arabidopsis th... [more]
Y3545_ARATH5.347e-4156.67Probable receptor-like protein kinase At3g55450 OS... [more]
APK2A_ARATH2.032e-4070.48Protein kinase 2A, chloroplastic OS=Arabidopsis th... [more]
CX32_ARATH1.560e-3243.56Probable serine/threonine-protein kinase Cx32, chl... [more]
Y5707_ARATH1.463e-2250.00Probable receptor-like protein kinase At5g47070 OS... [more]
PBS1_ARATH4.405e-1951.69Serine/threonine-protein kinase PBS1 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionC03004G08SK OF2 Citrus clementina cDNA clone C03004G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291162 ID=CX291162; Name=CX291162; organism=Citrus clementina; type=EST; length=661bp
TGCAATTCCTCTTCACCTCCTCCTAATTTCAAACAAACAGCTCCCCTTTC
CTCCATCTCTCTCTCTTTCCCCTTCTCTTTCTCTTTTTGTTTTTGCTTGC
AAATTGAATCAAAGCAAAGCTCGAGCTTCAGGGCTGGATTCTATAAAAGA
AAACGGAGGGAGAGGGAGGAAGTTTAAGAAAAGGCTTCTTGGTTTTCTGG
AATTTGGTTTTATGGGGATTTGCTTGAGTGCTCGAATCAAAGCTGAGAGC
CCATTCAACACAGGGGTGAGTTCAAAGTATGTTAGCTCAGATGGGAATGA
TATGAGCAGCACGGGTAGTAAGGTTTCATCATTATCTGTTCCTCCTACTC
CTAGGAGCGAGGGTGAGATCTTGCGATCCCCTAATTTGAAGAGTTTCAGT
TTTTCTGACCTCAAAACGGCCACCAGGAATTTTCGTCCAGATAGTGTGTT
AGGAGAGGGTGGTTTTGGTTCTGTTTTTAAAGGGTGGATTGATGAGCATT
CATTCGCTGCTACCAAGCCTGGGACTGGTATGGTTATTGCTGTGAAAAGG
CTTAACCAAGATGGTTTCCAAGGTCACAAGGAGTGGCTGGCAGAAGTAAA
TTATCTGGGGCAGCTTTACCATCCCAATCTTGTGAAATTGATTGGATACT
GCTTGGAGGAT
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