CX291166

Overview
NameCX291166
Unique NameCX291166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig175 contig Ccv1_Contig175:605..1207. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291166 vs. ExPASy Swiss-Prot
Match: TC753_ARATH (Protein TOC75-3, chloroplastic OS=Arabidopsis thaliana GN=TOC75-3 PE=1 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 2.351e-82
Identity = 143/160 (89.38%), Postives = 149/160 (93.12%), Query Frame = 3
Query:    3 LGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 482
            LGIGSKFPFFNRHQLT+T+F QL++VE+GA K PPPVLVLHGHYGGCVGDLPSYDAF LGGPYSVRGYNMGELGAARNI E+GAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPT VYRR G GSSYG G KLGLVRAEYAVDHN GTGALFFRFGERY
Sbjct:  659 LGIGSKFPFFNRHQLTMTKFIQLREVEQGAGKSPPPVLVLHGHYGGCVGDLPSYDAFVLGGPYSVRGYNMGELGAARNIAEVGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTAVYRRTGQGSSYGAGVKLGLVRAEYAVDHNNGTGALFFRFGERY 818          
BLAST of CX291166 vs. ExPASy Swiss-Prot
Match: TOC75_PEA (Protein TOC75, chloroplastic OS=Pisum sativum GN=TOC75 PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.092e-79
Identity = 138/160 (86.25%), Postives = 146/160 (91.25%), Query Frame = 3
Query:    3 LGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 482
            LG+GS FPFFNRHQLT+T+F QL  VEEGA K PPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGE+GAARNILEL AEIRIP+K THVYAF EHG DLGSSKDVKGNPT VYRRMG GSSYG G KLGLVRAEYAVDHN+GTGA+FFRFGER+
Sbjct:  650 LGVGSNFPFFNRHQLTVTKFLQLMSVEEGAGKSPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEIRIPIKGTHVYAFAEHGTDLGSSKDVKGNPTVVYRRMGQGSSYGAGMKLGLVRAEYAVDHNSGTGAVFFRFGERF 809          
BLAST of CX291166 vs. ExPASy Swiss-Prot
Match: TC754_ARATH (Protein TOC75-4, chloroplastic OS=Arabidopsis thaliana GN=TOC75-4 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 1.928e-76
Identity = 133/160 (83.12%), Postives = 144/160 (90.00%), Query Frame = 3
Query:    3 LGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 482
            LGIG+ FP FNRHQL+LT F QLKQVEEG++KP PPVLVLHG YGGC+GDLPSYD F LGGP SVRGY+MGELGAA+NILELGAEIRIPVKNTHVYAF EHGNDLGSSKDVKGNPT +YR+MGHGSSYG+G KLG+VRAEY V HN GTGALF RFGERY
Sbjct:  237 LGIGNNFPLFNRHQLSLTSFIQLKQVEEGSDKPQPPVLVLHGRYGGCIGDLPSYDVFALGGPNSVRGYSMGELGAAKNILELGAEIRIPVKNTHVYAFAEHGNDLGSSKDVKGNPTGLYRKMGHGSSYGLGVKLGMVRAEYTVRHNRGTGALFLRFGERY 396          
BLAST of CX291166 vs. ExPASy Swiss-Prot
Match: TOC75_ORYSJ (Protein TOC75, chloroplastic OS=Oryza sativa subsp. japonica GN=TOC75 PE=2 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 5.804e-73
Identity = 126/160 (78.75%), Postives = 141/160 (88.12%), Query Frame = 3
Query:    3 LGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYAVDHNTGTGALFFRFGERY 482
            LGIGSK PFFNRHQLTLT+F  L + E+GA KP P VLVLHGHY GCVGDLPSYDAFTLGGPYSVRGY MGELGA+RN+LE+ +E+RIPV+NT+VY FVEHG DLGSSKDVKGNPTE +RR+GHGSSYG+G KLGLVR EY VDHN GTG +FFRFGER+
Sbjct:  658 LGIGSKNPFFNRHQLTLTKFVNLNKQEKGAGKPLPAVLVLHGHYAGCVGDLPSYDAFTLGGPYSVRGYGMGELGASRNVLEVASELRIPVRNTYVYGFVEHGTDLGSSKDVKGNPTEFFRRVGHGSSYGLGVKLGLVRGEYIVDHNAGTGTVFFRFGERF 817          
BLAST of CX291166 vs. ExPASy Swiss-Prot
Match: OEP80_ARATH (Outer envelope protein of 80 kDa OS=Arabidopsis thaliana GN=OEP80 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.837e-11
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 3
Query:  135 GGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYAV-DHNTGTGALFFRFG 473
            G  VG    ++AF +GG  SVRGY  G +G+ R+ +    E+  PV+       F ++G D+GS   V G+P     + G G  YG+G +    LG +R EYA  D + G     F FG
Sbjct:  613 GHVVGKFSPHEAFVIGGTNSVRGYEEGAVGSGRSYVVGSGELSFPVRGPVEGVIFTDYGTDMGSGSTVPGDPAGARLKPGSGYGYGLGVRVDSPLGPLRLEYAFNDQHAGR----FHFG 727          
The following BLAST results are available for this feature:
BLAST of CX291166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TC753_ARATH2.351e-8289.38Protein TOC75-3, chloroplastic OS=Arabidopsis thal... [more]
TOC75_PEA1.092e-7986.25Protein TOC75, chloroplastic OS=Pisum sativum GN=T... [more]
TC754_ARATH1.928e-7683.13Protein TOC75-4, chloroplastic OS=Arabidopsis thal... [more]
TOC75_ORYSJ5.804e-7378.75Protein TOC75, chloroplastic OS=Oryza sativa subsp... [more]
OEP80_ARATH4.837e-1135.29Outer envelope protein of 80 kDa OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionC03004G12SK OF2 Citrus clementina cDNA clone C03004G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291166 ID=CX291166; Name=CX291166; organism=Citrus clementina; type=EST; length=602bp
GCCTTGGTATTGGCAGCAAGTTTCCGTTCTTTAATCGCCATCAATTGACG
TTGACGCGATTTTTCCAATTGAAGCAAGTTGAAGAAGGTGCTAATAAACC
ACCACCTCCTGTTCTAGTACTTCATGGCCACTATGGAGGTTGCGTTGGAG
ACCTACCAAGTTATGATGCATTTACACTTGGGGGTCCCTATTCAGTTAGG
GGTTACAATATGGGTGAGTTAGGTGCTGCTAGAAACATTCTAGAGCTAGG
AGCTGAGATCCGGATTCCTGTGAAAAACACGCATGTGTATGCTTTTGTTG
AGCATGGCAATGATCTAGGAAGTTCAAAGGATGTCAAGGGGAACCCGACA
GAGGTCTACAGGCGAATGGGTCACGGTTCATCGTATGGTGTTGGTGCCAA
GCTGGGGCTAGTTCGAGCTGAGTATGCTGTTGATCATAACACTGGAACTG
GTGCCTTATTCTTCAGATTTGGAGAGAGATACTGAAGTGCAATTAGGCTT
TACAGTTTTTCTTTTTACAGTCTGGCCAGCAGGTTTTCAAAGAATGTTAG
CATGCTCGTCTGCGGAGATGCTTGGACCTGGTTACATGATTTAATTTGAG
AG
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