CX291168

Overview
NameCX291168
Unique NameCX291168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length195
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.222e-20
Identity = 47/65 (72.31%), Postives = 50/65 (76.92%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            GQ IGCHTV  WNEQLQK N+T+ L+  D TASWCGPCR IA FLA LA KLPNV  LKVD DEL
Sbjct:    6 GQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDEL 70          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.519e-19
Identity = 47/65 (72.31%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            GQ I CHTV  WNEQLQK NE++ LV  D TASWCGPCR IA F A LA KLPNVL LKVD DEL
Sbjct:    6 GQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDEL 70          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.873e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            GQ  GCH V  WNE  +K  ET+ LV  D TASWCGPCR IA  LA +A K+P+V+ LKVD DEL
Sbjct:   12 GQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDEL 76          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.058e-15
Identity = 39/65 (60.00%), Postives = 45/65 (69.23%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            GQ IG HTV  WNE LQK  + + L+  D TASWCGPC+ IA+F A LA K+P V  LKVD DEL
Sbjct:    5 GQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDEL 69          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.183e-13
Identity = 33/64 (51.56%), Postives = 42/64 (65.62%), Query Frame = 1
Query:    4 QDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            Q I CHTV  WNE+ QK  ++  L+  D TASWCGPCR I  +++ LA K P+V   KVD D+L
Sbjct:    6 QVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDL 69          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.350e-12
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            G+ I CHT+  WNE+++  NE++ L+  D TASWC PCR IA   A +A K  NV+  K+D DEL
Sbjct:    5 GEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDEL 69          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.836e-12
Identity = 31/65 (47.69%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            G    CH+  GW  +LQ+  +T+ LVA D TA+WCGPCR I      L+ K P +  LKVD DEL
Sbjct:    4 GNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDEL 68          
BLAST of CX291168 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.989e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 1
Query:    1 GQDIGCHTV*GWNEQLQKINETEHLVAADDTASWCGPCRSIAAFLA*LAYKLPNVLVLKVDADEL 195
            G+ I CHTV  W E+L+  NE++ L+  D TA+WC PCR IA   A LA K  +V+  KVD DEL
Sbjct:    5 GEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDEL 69          
The following BLAST results are available for this feature:
BLAST of CX291168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TRXH_RICCO5.222e-2072.31Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH1_ARATH1.519e-1972.31Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC3.873e-1560.00Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH2_TOBAC5.058e-1560.00Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH_FAGES6.183e-1351.56Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH2.350e-1249.23Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_PICMA6.836e-1247.69Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH3_ARATH1.989e-1150.77Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
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Properties
Property NameValue
Genbank descriptionC03004H03SK OF2 Citrus clementina cDNA clone C03004H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291168 ID=CX291168; Name=CX291168; organism=Citrus clementina; type=EST; length=195bp
GGACAAGATATAGGGTGCCACACCGTTTAGGGCTGGAACGAGCAGCTACA
GAAGATCAATGAAACCGAACACCTGGTTGCTGCTGATGACACTGCTTCAT
GGTGCGGACCATGCCGTAGCATTGCTGCTTTCTTGGCATAGCTTGCCTAC
AAACTGCCTAATGTGCTGGTTCTGAAGGTTGATGCGGATGAACTG
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