CX291169 | Citrus Genome Database

Overview


Name	CX291169
Unique Name	CX291169
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	624

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX291169_ssr1	microsatellite	CX291169_ssr1:1..12.	BLAST: Citrus ESTs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 2.135e-63
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYL+SYISTIGVDFKIRTVEQDGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 86.6557 bits (213), Expect = 2.135e-63
Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 624
            +VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDL +
Sbjct:   86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLAE 127

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: YPTM2_MAIZE (GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 1.049e-62
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+ + +T
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91

HSP 2 Score: 83.1889 bits (204), Expect = 1.049e-62
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            IVYDVTDQESFNNVKQWLNEIDRYAS+NVNKLLVGNK DLT
Sbjct:   86 IVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLT 126

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1A_RAT (Ras-related protein Rab-1A OS=Rattus norvegicus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 3.303e-61
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 85.5001 bits (210), Expect = 3.303e-61
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   89 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 129

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1A_MOUSE (Ras-related protein Rab-1A OS=Mus musculus GN=Rab1A PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 3.303e-61
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 85.5001 bits (210), Expect = 3.303e-61
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   89 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 129

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1A_HUMAN (Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1A PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 3.303e-61
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 85.5001 bits (210), Expect = 3.303e-61
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   89 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 129

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1A_CANFA (Ras-related protein Rab-1A OS=Canis familiaris GN=RAB1A PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 3.303e-61
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 85.5001 bits (210), Expect = 3.303e-61
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   89 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 129

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1_DISOM (Ras-related protein ORAB-1 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 3.304e-61
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 85.5001 bits (210), Expect = 3.304e-61
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   86 VVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 126

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 7.323e-61
Identity = 82/91 (90.11%), Postives = 89/91 (97.80%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRF+DDSY++SYISTIGVDFKIRTVEQDGKT+KLQIWDTAGQERFRTITSSYYRGAHGII+ + +T
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFSDDSYVESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVT 91

HSP 2 Score: 80.8777 bits (198), Expect = 7.323e-61
Identity = 37/42 (88.10%), Postives = 41/42 (97.62%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTD 624
            IVYDVTD+ESFNNVKQWL+EIDRYAS+NVNKLLVGNK DLT+
Sbjct:   86 IVYDVTDEESFNNVKQWLSEIDRYASDNVNKLLVGNKSDLTE 127

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: RAB1A_PIG (Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 2.116e-60
Identity = 81/91 (89.01%), Postives = 87/91 (95.60%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRT+E DGKT+KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    4 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 94

HSP 2 Score: 82.8037 bits (203), Expect = 2.116e-60
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQ SFNNVKQWL EIDRYASENVNKLLVGNKCDLT
Sbjct:   89 VVYDVTDQGSFNNVKQWLQEIDRYASENVNKLLVGNKCDLT 129

[Close]

BLAST of CX291169 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.760e-60
Identity = 81/91 (89.01%), Postives = 86/91 (94.51%), Query Frame = 3

Query:  144 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIVSFPLT 416
            MNPEYDYLFKLLLIGDSGVGKSCLLLRFADD+Y +SYISTIGVDFKIRTVE DGK +KLQIWDTAGQERFRTITSSYYRGAHGIIV + +T
Sbjct:    1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVT 91

HSP 2 Score: 83.9593 bits (206), Expect = 2.760e-60
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1

Query:  499 IVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLT 621
            +VYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNK DLT
Sbjct:   86 VVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLT 126

The following BLAST results are available for this feature:

BLAST of CX291169 vs. ExPASy Swiss-Prot

BLAST of CX291169 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 496


Match Name	E-value	Identity	Description
RIC1_ORYSJ	2.135e-63	93.41	Ras-related protein RIC1 OS=Oryza sativa subsp. ja...	[more]
YPTM2_MAIZE	1.049e-62	93.41	GTP-binding protein YPTM2 OS=Zea mays GN=YPTM2 PE=...	[more]
RAB1A_RAT	3.303e-61	89.01	Ras-related protein Rab-1A OS=Rattus norvegicus GN...	[more]
RAB1A_MOUSE	3.303e-61	89.01	Ras-related protein Rab-1A OS=Mus musculus GN=Rab1...	[more]
RAB1A_HUMAN	3.303e-61	89.01	Ras-related protein Rab-1A OS=Homo sapiens GN=RAB1...	[more]
RAB1A_CANFA	3.303e-61	89.01	Ras-related protein Rab-1A OS=Canis familiaris GN=...	[more]
RAB1_DISOM	3.304e-61	89.01	Ras-related protein ORAB-1 OS=Discopyge ommata PE=...	[more]
RBD2A_ARATH	7.323e-61	90.11	Ras-related protein RABD2A OS=Arabidopsis thaliana...	[more]
RAB1A_PIG	2.116e-60	89.01	Ras-related protein Rab-1A OS=Sus scrofa GN=RAB1A ...	[more]
YPTC1_CHLRE	2.760e-60	89.01	GTP-binding protein YPTC1 OS=Chlamydomonas reinhar...	[more]

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Properties


Property Name	Value
Genbank description	C03004H04SK OF2 Citrus clementina cDNA clone C03004H04, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291169 ID=CX291169; Name=CX291169; organism=Citrus clementina; type=EST; length=624bp
ATCATCATCATCGACATTTTGCTTTCTTCGTCAAATTCTCTCTCAATCTC
ACCTCCTTAGCTTGTCTGTGCCAAACTCCCGGTCCAATCTCCAGCTGGAC
CGGTTCGATTCTGCGCGAACCCCCTCAACATCTTATTGCAGTCATGAATC
CTGAATATGACTACTTGTTCAAGCTTTTGCTGATTGGAGACTCTGGAGTT
GGCAAATCGTGTCTTCTTCTGAGATTTGCTGATGATTCGTACCTGGACAG
TTACATTAGCACTATTGGGGTTGACTTTAAAATTCGCACAGTGGAGCAAG
ACGGGAAGACTGTAAAACTCCAAATTTGGGACACTGCAGGGCAAGAACGA
TTCAGGACAATCACTAGCAGCTACTACCGTGGAGCACATGGCATTATCGT
AAGTTTTCCTTTAACTCTTAGTTTCATTGTTATTTCTCACAGTTCTACCC
TTTGTTAGCGTGTGGCTACTTTCATTGAATTGATGGCATGTATGGCAGAT
TGTTTATGATGTTACAGACCAAGAGAGCTTCAACAACGTTAAGCAGTGGT
TGAATGAAATTGATCGCTATGCAAGTGAAAATGTAAACAAGCTTCTGGTT
GGAAACAAGTGTGATCTCACTGAT