CX291170

Overview
NameCX291170
Unique NameCX291170
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length428
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: P2_ARATH (Probable NADP-dependent oxidoreductase P2 OS=Arabidopsis thaliana GN=P2 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 3.058e-31
Identity = 62/111 (55.86%), Postives = 84/111 (75.68%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLHSYHDPQGIHNLFTLVTKQITMKGFLQSDYLHLYPRFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVRVACE 335
            G+MLDA LLNM  HGRIAVCGM+S ++  + +G+HNL  ++ K+I ++GF+ +D+   YP+FL+ V+   K+GKI YVED+ +GLE AP A VGLF GKNVGKQVV +A E
Sbjct:  233 GKMLDAVLLNMNPHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVADFYDKYPKFLELVLPRIKEGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVIARE 343          
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: P1_ARATH (Probable NADP-dependent oxidoreductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.982e-30
Identity = 61/111 (54.95%), Postives = 85/111 (76.58%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLHSYHDPQGIHNLFTLVTKQITMKGFLQSDYLHLYPRFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVRVACE 335
            G+MLDA L+NM  HGRIAVCGM+S ++  + +G+HNL  ++ K+I ++GF+ SD+   Y +FL++V+ + ++GKI YVED+ +GLE AP A VGLF GKNVGKQVV VA E
Sbjct:  235 GKMLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRIRIQGFVVSDFYDKYSKFLEFVLPHIREGKITYVEDVADGLEKAPEALVGLFHGKNVGKQVVVVARE 345          
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: YKM8_SCHPO (Zinc-type alcohol dehydrogenase-like protein PB24D3.08c OS=Schizosaccharomyces pombe GN=SPAPB24D3.08c PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.128e-16
Identity = 43/112 (38.39%), Postives = 70/112 (62.50%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLHSYHDPQGIHNLFTLVTKQITMKGFLQSDYLHLYP-RFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVRVACE 335
            GE +DA L NM   GRI  CG +S ++  +P  + NL  ++ K +T++GF+ ++ L  Y  ++ + +     +GKI Y  D+ +GLE+AP AF+G+  GKN GK +V++A E
Sbjct:  238 GETMDAVLENMNLQGRIIFCGAISQYNNPNPYRVKNLGMVLVKSLTIQGFIVANILPQYQEQYFEEMPKLIAEGKIKYKCDVYDGLESAPEAFIGMLQGKNSGKTIVKIADE 349          
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: YNCB_ECOLI (Putative NADP-dependent oxidoreductase yncB OS=Escherichia coli (strain K12) GN=yncB PE=3 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 3.756e-13
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLHSYHD-PQGIHNL----FTLVTKQITMKGFL-QSDYLHLYPRFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVRVA 329
            G++ DA L  +    RI VCG+VS ++  + P G   L     T++ K+I ++GF+   DY H    F   +    K+ KI Y E++ +GLENAP  F+GL  GKN GK V+RVA
Sbjct:  228 GKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQREMGQWVKEDKIHYREEITDGLENAPQTFIGLLKGKNFGKVVIRVA 342          
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: YFMJ_BACSU (Putative NADP-dependent oxidoreductase yfmJ OS=Bacillus subtilis GN=yfmJ PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.179e-12
Identity = 40/112 (35.71%), Postives = 60/112 (53.57%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLH---SYHDPQGIHNLFTLVTKQITMKGFLQSDYLHLYPRFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVRVA 329
            G + DA +  + +  RI VCG +S +   S  D  G      L+  +  M+GF+ SDY   +      +    K GK+ Y E + EG EN P AF+GLF G+N GKQ+++V+
Sbjct:  225 GPISDAVMNLLNEFARIPVCGAISSYNAESEADDMGPRVQSKLIKTKSLMQGFIVSDYSDRFSEGAKQLAEWLKAGKLHYEETITEGFENIPDAFLGLFKGENKGKQLIKVS 336          
BLAST of CX291170 vs. ExPASy Swiss-Prot
Match: PTGR1_BOVIN (Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.996e-11
Identity = 36/109 (33.03%), Postives = 64/109 (58.72%), Query Frame = 3
Query:    3 GEMLDAALLNMRDHGRIAVCGMVSLHSYHDPQGIH-NLFTLVTKQITMKGFLQSDYL-HLYPRFLDYVISNYKQGKIVYVEDMNEGLENAPAAFVGLFSGKNVGKQVVR 323
            GE  + A+  M+  GRIA+CG +S+++   P     +   ++ K++ ++GF+   +   +  + L  ++    +GKI Y E + EG EN PAAF+GL  G+N+GK +V+
Sbjct:  220 GEFSNVAITQMKKFGRIAICGAISVYNRTSPLSPGPSPEIIIFKELHLQGFVVYRWQGEVRQKALRDLLKWVSEGKIQYHEHVTEGFENMPAAFIGLLKGENLGKAIVK 328          
The following BLAST results are available for this feature:
BLAST of CX291170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
P2_ARATH3.058e-3155.86Probable NADP-dependent oxidoreductase P2 OS=Arabi... [more]
P1_ARATH1.982e-3054.95Probable NADP-dependent oxidoreductase P1 OS=Arabi... [more]
YKM8_SCHPO2.128e-1638.39Zinc-type alcohol dehydrogenase-like protein PB24D... [more]
YNCB_ECOLI3.756e-1340.00Putative NADP-dependent oxidoreductase yncB OS=Esc... [more]
YFMJ_BACSU3.179e-1235.71Putative NADP-dependent oxidoreductase yfmJ OS=Bac... [more]
PTGR1_BOVIN5.996e-1133.03Prostaglandin reductase 1 OS=Bos taurus GN=PTGR1 P... [more]
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Properties
Property NameValue
Genbank descriptionC03004H05SK OF2 Citrus clementina cDNA clone C03004H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291170 ID=CX291170; Name=CX291170; organism=Citrus clementina; type=EST; length=428bp
GTGGCGAAATGCTTGACGCAGCATTGCTCAACATGAGGGATCATGGGCGA
ATAGCAGTTTGCGGAATGGTATCTCTACACAGCTACCATGATCCCCAAGG
CATTCATAACTTGTTTACTCTTGTAACAAAGCAAATCACAATGAAAGGAT
TCTTACAAAGTGATTACTTGCATCTGTACCCACGTTTCTTGGACTATGTT
ATCAGCAATTACAAGCAAGGGAAGATTGTTTACGTCGAAGACATGAACGA
AGGTTTGGAAAATGCTCCAGCTGCTTTTGTTGGGTTATTTTCGGGCAAGA
ATGTGGGCAAGCAGGTTGTGCGTGTAGCCTGTGAATGATTCTCATTTAAC
GTACATGGGACTTTGTGGACGCACTCATATTAATAATATTATTGCTTTTT
GGAAAAAAAAAAAAAAAAAAAAAAAAAA
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