CX291172

Overview
NameCX291172
Unique NameCX291172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length481
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12304 contig Ccv1_Contig12304:222..702. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 2.335e-21
Identity = 53/85 (62.35%), Postives = 56/85 (65.88%), Query Frame = 1
Query:    1 GTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 255
            GTYKGREGKVVQVYRRKWVIHIERITREKVNG+TVNVGI PSKVVIT                           TKFT ED+MQ+
Sbjct:   60 GTYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLERKAKGRAAADKEKGTKFTSEDVMQN 144          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 8.305e-19
Identity = 47/85 (55.29%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 GTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 255
            GT+KGREGKV+QVYRRKWVIHIERITREKVNGSTVNVG+N S V+IT                           TKF+ ED+M++
Sbjct:   60 GTFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLERKANGRAAADKEKGTKFSAEDVMEN 144          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_BRARA (60S ribosomal protein L26 OS=Brassica rapa GN=RPL26 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.566e-17
Identity = 46/85 (54.12%), Postives = 53/85 (62.35%), Query Frame = 1
Query:    1 GTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITXXXXXXXXXXXXXXXXXXXXXXXXXXXTKFTPEDIMQS 255
            GTYKGREGK+ QVYRRK VIHIER+TREKVNG+TVNVG+ P+KVVIT                           TKFT  D+MQ+
Sbjct:   60 GTYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLERKAKGRAAADKDKGTKFTAVDVMQN 144          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_MACFA (60S ribosomal protein L26 OS=Macaca fascicularis GN=RPL26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_HUMAN (60S ribosomal protein L26 OS=Homo sapiens GN=RPL26 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_CHICK (60S ribosomal protein L26 (Fragment) OS=Gallus gallus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   43 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 90          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26_AILME (60S ribosomal protein L26 OS=Ailuropoda melanoleuca GN=RPL26 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
BLAST of CX291172 vs. ExPASy Swiss-Prot
Match: RL26L_HUMAN (60S ribosomal protein L26-like 1 OS=Homo sapiens GN=RPL26L1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.981e-12
Identity = 35/48 (72.92%), Postives = 44/48 (91.67%), Query Frame = 1
Query:    1 GTYKGRE-GKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVIT 141
            G YKG++ GKVVQVYR+K+VI+IER+ REK NG+TV+VGI+PSKVVIT
Sbjct:   60 GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVIT 107          
The following BLAST results are available for this feature:
BLAST of CX291172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RL261_ARATH2.335e-2162.3560S ribosomal protein L26-1 OS=Arabidopsis thalian... [more]
RL262_ARATH8.305e-1955.2960S ribosomal protein L26-2 OS=Arabidopsis thalian... [more]
RL26_BRARA1.566e-1754.1260S ribosomal protein L26 OS=Brassica rapa GN=RPL2... [more]
RL26_MOUSE1.981e-1272.9260S ribosomal protein L26 OS=Mus musculus GN=Rpl26... [more]
RL26_MACFA1.981e-1272.9260S ribosomal protein L26 OS=Macaca fascicularis G... [more]
RL26_HUMAN1.981e-1272.9260S ribosomal protein L26 OS=Homo sapiens GN=RPL26... [more]
RL26_CHICK1.981e-1272.9260S ribosomal protein L26 (Fragment) OS=Gallus gal... [more]
RL26_BOVIN1.981e-1272.9260S ribosomal protein L26 OS=Bos taurus GN=RPL26 P... [more]
RL26_AILME1.981e-1272.9260S ribosomal protein L26 OS=Ailuropoda melanoleuc... [more]
RL26L_HUMAN1.981e-1272.9260S ribosomal protein L26-like 1 OS=Homo sapiens G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03004H07SK OF2 Citrus clementina cDNA clone C03004H07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291172 ID=CX291172; Name=CX291172; organism=Citrus clementina; type=EST; length=481bp
GGGACCTACAAGGGGCGCGAGGGCAAAGTCGTTCAAGTGTATCGCCGGAA
GTGGGTCATTCACATCGAGCGCATCACTCGCGAGAAGGTTAATGGATCCA
CTGTGAATGTGGGAATCAACCCATCAAAGGTCGTGATCACCAAGCTCCGT
CTGGACAAGGACAGGAAGTCTTTGCTCGATCGCAAGGCCAAGGGACGTGC
CGCCGCTGACAAGGAGAAGGGTACCAAGTTCACCCCAGAGGATATTATGC
AGAGTGTTGACTAATTTTTATAAGAGGTTGTTTTTAAAGTTTTTGTTTAA
TCATAGATTTTATGGATTTAGGATGTTTTGTTTTGGCAATGTCACTAAGA
TATTTCTATTGTTATTGTGTTATGCCATGAGGATCCGATTATGGGCTTAT
GTTGGAGATTTAAGATACTTCTTTGGATTTTCTCCTCGTCGTTTCAATTT
TAATTCTATATTTTAAAAAAAAAAAAAAAAA
back to top