CX291176 | Citrus Genome Database

Overview


Name	CX291176
Unique Name	CX291176
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	635

Libraries


Library Name	Type
OF2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSG5_ARATH (Shaggy-related protein kinase epsilon OS=Arabidopsis thaliana GN=ASK5 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 3.634e-83
Identity = 126/130 (96.92%), Postives = 126/130 (96.92%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTT IDIWS GCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKR PPEAVDL
Sbjct:  205 LLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTTIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRTPPEAVDL 334

HSP 2 Score: 62.3882 bits (150), Expect = 3.634e-83
Identity = 26/35 (74.29%), Postives = 31/35 (88.57%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QICRALAYIHGG+GVCHRDIKPQNLLV
Sbjct:  173 IYVKLYTYQICRALAYIHGGVGVCHRDIKPQNLLV 207

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 3.972e-82
Identity = 125/130 (96.15%), Postives = 127/130 (97.69%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQ+K+CDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWS GCVL ELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL
Sbjct:  205 LLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 334

HSP 2 Score: 58.5362 bits (140), Expect = 3.972e-82
Identity = 25/35 (71.43%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QICRALAYIH  IGVCHRDIKPQNLLV
Sbjct:  173 IYVKLYSYQICRALAYIHNSIGVCHRDIKPQNLLV 207

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 9.633e-81
Identity = 127/130 (97.69%), Postives = 127/130 (97.69%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWS GCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNY EFKFPQIKAHPWHKIFHKRMPPEAVDL
Sbjct:  204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYNEFKFPQIKAHPWHKIFHKRMPPEAVDL 333

HSP 2 Score: 52.373 bits (124), Expect = 9.633e-81
Identity = 23/35 (65.71%), Postives = 29/35 (82.86%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            +++ +  +QI RAL+YIH  IGVCHRDIKPQNLLV
Sbjct:  172 ILVKLYTYQIFRALSYIHHTIGVCHRDIKPQNLLV 206

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 270.781 bits (691), Expect = 9.634e-81
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAID+WS GCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL
Sbjct:  200 LLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 329

HSP 2 Score: 50.8322 bits (120), Expect = 9.634e-81
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QI RAL+YIH  IGVCHRDIKPQNLLV
Sbjct:  168 IYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLV 202

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSG3_ARATH (Shaggy-related protein kinase gamma OS=Arabidopsis thaliana GN=ASK3 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 1.639e-80
Identity = 127/130 (97.69%), Postives = 128/130 (98.46%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAID+WS GCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL
Sbjct:  204 LLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 333

HSP 2 Score: 50.0618 bits (118), Expect = 1.639e-80
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            V + +  +QI R+L+YIH  IGVCHRDIKPQNLLV
Sbjct:  172 VYVKLYTYQIFRSLSYIHRCIGVCHRDIKPQNLLV 206

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 1.053e-79
Identity = 126/130 (96.92%), Postives = 127/130 (97.69%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAID+WSVGCVLAELLLGQPLFPGE GVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMP EAVDL
Sbjct:  206 LLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGERGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPAEAVDL 335

HSP 2 Score: 50.8322 bits (120), Expect = 1.053e-79
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QI RAL+YIH  IGVCHRDIKPQNLLV
Sbjct:  174 IYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLV 208

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSG10_ARATH (Shaggy-related protein kinase kappa OS=Arabidopsis thaliana GN=ASK10 PE=1 SV=2)

HSP 1 Score: 259.996 bits (663), Expect = 6.759e-79
Identity = 119/130 (91.54%), Postives = 126/130 (96.92%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQ+K+CDFGSAKVLVKGEPN+SYICSRYYRAPELIFGA+EYTTAIDIWS GCV+AELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIK HPWHK+F KR+PPEAVDL
Sbjct:  214 LLVNPHTHQLKICDFGSAKVLVKGEPNVSYICSRYYRAPELIFGASEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDL 343

HSP 2 Score: 55.4546 bits (132), Expect = 6.759e-79
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QICRALAYIH   G+CHRDIKPQNLLV
Sbjct:  182 IYVKLYTYQICRALAYIHNSFGLCHRDIKPQNLLV 216

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSG4_ARATH (Shaggy-related protein kinase delta OS=Arabidopsis thaliana GN=ASK4 PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.551e-78
Identity = 121/130 (93.08%), Postives = 126/130 (96.92%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQ+K+CDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWS GCV+AELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIK HPWHK+F KR+PPEAVDL
Sbjct:  213 LLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSTGCVMAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKPHPWHKVFQKRLPPEAVDL 342

HSP 2 Score: 51.6026 bits (122), Expect = 2.551e-78
Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QICR LAY+H   G+CHRDIKPQNLLV
Sbjct:  181 IYVKLYTYQICRGLAYLHNCCGLCHRDIKPQNLLV 215

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: MSK2_MEDSA (Glycogen synthase kinase-3 homolog MsK-2 OS=Medicago sativa GN=MSK-2 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.552e-78
Identity = 123/130 (94.62%), Postives = 125/130 (96.15%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VNPHTHQ+KLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYT+AIDIWS GCVL ELLLGQPLFPG SGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIF KRMPPEAVDL
Sbjct:  205 LLVNPHTHQLKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTSAIDIWSAGCVLGELLLGQPLFPGASGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFRKRMPPEAVDL 334

HSP 2 Score: 51.9878 bits (123), Expect = 2.552e-78
Identity = 22/35 (62.86%), Postives = 28/35 (80.00%), Query Frame = 2

Query:   74 VILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            + + +  +QICR+LAYIH  +GV HRDIKPQNLLV
Sbjct:  173 IYVKLYSYQICRSLAYIHNCVGVSHRDIKPQNLLV 207

[Close]

BLAST of CX291176 vs. ExPASy Swiss-Prot
Match: KSGT_BRANA (Shaggy-related protein kinase theta OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 2.785e-77
Identity = 117/130 (90.00%), Postives = 125/130 (96.15%), Query Frame = 1

Query:  244 LQVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDIWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 633
            L VN HTHQ+K+CDFGSAK+LV GEPNISYICSRYYRAPELIFGATEYT AID+WS GCV+AELLLGQPLFPGESG+DQLVEIIK+LGTPTREEI+CMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL
Sbjct:  265 LLVNTHTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTNAIDMWSGGCVMAELLLGQPLFPGESGIDQLVEIIKILGTPTREEIRCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDL 394

HSP 2 Score: 54.299 bits (129), Expect = 2.785e-77
Identity = 25/59 (42.37%), Postives = 39/59 (66.10%), Query Frame = 2

Query:    2 TRFSFMVNYTVLSE*LSVLSIDFHVILTIIDWQICRALAYIHGGIGVCHRDIKPQNLLV 178
            T +  + +YT +++ + ++ +  +       +QICRAL Y+H  +GVCHRDIKPQNLLV
Sbjct:  215 TVYRALKHYTKMNQHMPIILVQLYT------YQICRALNYLHRVVGVCHRDIKPQNLLV 267

The following BLAST results are available for this feature:

BLAST of CX291176 vs. ExPASy Swiss-Prot

BLAST of CX291176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500


Match Name	E-value	Identity	Description
KSG5_ARATH	3.634e-83	96.92	Shaggy-related protein kinase epsilon OS=Arabidops...	[more]
MSK3_MEDSA	3.972e-82	96.15	Glycogen synthase kinase-3 homolog MsK-3 OS=Medica...	[more]
MSK1_TOBAC	9.633e-81	97.69	Shaggy-related protein kinase NtK-1 OS=Nicotiana t...	[more]
KSG1_ARATH	9.634e-81	97.69	Shaggy-related protein kinase alpha OS=Arabidopsis...	[more]
KSG3_ARATH	1.639e-80	97.69	Shaggy-related protein kinase gamma OS=Arabidopsis...	[more]
MSK1_MEDSA	1.053e-79	96.92	Glycogen synthase kinase-3 homolog MsK-1 OS=Medica...	[more]
KSG10_ARATH	6.759e-79	91.54	Shaggy-related protein kinase kappa OS=Arabidopsis...	[more]
KSG4_ARATH	2.551e-78	93.08	Shaggy-related protein kinase delta OS=Arabidopsis...	[more]
MSK2_MEDSA	2.552e-78	94.62	Glycogen synthase kinase-3 homolog MsK-2 OS=Medica...	[more]
KSGT_BRANA	2.785e-77	90.00	Shaggy-related protein kinase theta OS=Brassica na...	[more]

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Properties


Property Name	Value
Genbank description	C03004H11SK OF2 Citrus clementina cDNA clone C03004H11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291176 ID=CX291176; Name=CX291176; organism=Citrus clementina; type=EST; length=635bp
CACGAGGTTCTCCTTCATGGTCAATTACACTGTTTTATCCGAGTAATTAT
CAGTTTTGTCTATAGATTTCCATGTTATATTAACTATTATTGACTGGCAG
ATTTGCAGAGCATTGGCATATATTCATGGGGGCATAGGAGTATGCCACAG
GGACATCAAGCCGCAGAATCTTCTTGTTTGTAACTGAAGCTTAGATTCCA
TCCTATTTTTTGCTTAGGTGCTATTTGCCAATAAAATCTGTTGTTGCAGG
TTAATCCCCATACCCATCAAGTCAAGCTCTGTGACTTTGGAAGTGCAAAA
GTTTTGGTCAAAGGCGAGCCAAACATATCATATATTTGTTCTCGTTACTA
TCGAGCTCCGGAACTCATATTTGGGGCAACTGAGTACACCACTGCAATTG
ACATATGGTCTGTTGGTTGTGTACTCGCTGAATTACTTCTCGGACAGCCT
CTCTTTCCGGGTGAGAGTGGAGTTGATCAGCTAGTTGAGATTATTAAGGT
ACTTGGCACACCAACTCGTGAGGAAATCAAATGCATGAATCCAAACTATA
CAGAGTTCAAATTCCCACAAATCAAGGCTCATCCTTGGCACAAAATATTC
CACAAGCGTATGCCCCCTGAAGCAGTAGATCTTGT