CX291191

Overview
NameCX291191
Unique NameCX291191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length317
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX291191_ssr302 microsatellite CX291191_ssr302:302..317. BLAST: Citrus ESTs to Populus V2 proteins
Homology
[Close]
BLAST of CX291191 vs. ExPASy Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 3.315e-11
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:    5 SLGVDHSQPMHLYCDSQAALHLAANLMFHERTKHIEVDCHFVRDEIQRSNIRPAYVSTHIQLADIFTKALGSKEFQFLLRKLGI 256
            S+ +    P+ +Y D+Q  + +A N   H+R KHI++  HF R+++Q + I   Y+ T  QLADIFTK L +  F  L  KLG+
Sbjct: 1317 SINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400
The following BLAST results are available for this feature:
BLAST of CX291191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPIA_DROME3.315e-1139.29Copia protein OS=Drosophila melanogaster GN=GIP PE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03005B05SK OF2 Citrus clementina cDNA clone C03005B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291191 ID=CX291191; Name=CX291191; organism=Citrus clementina; type=EST; length=317bp
GATGTCTCTCGGAGTTGATCACTCACAACCCATGCACCTGTATTGTGACA
GCCAGGCTGCTCTTCATCTAGCTGCCAATCTCATGTTTCATGAACGGACC
AAGCACATCGAAGTTGACTGTCATTTTGTCCGAGACGAAATTCAACGAAG
CAACATACGGCCTGCCTATGTGTCTACTCATATTCAGCTAGCTGATATCT
TCACAAAGGCACTTGGCAGCAAAGAGTTCCAGTTTCTTCTTCGCAAGTTG
GGCATTCGTGATCTCCATGCTCCAACTTGAGGGGGGGTGTTAACTCACGT
GTATATATATATATATA
back to top