CX291193

Overview
NameCX291193
Unique NameCX291193
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length278
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15223 contig Ccv1_Contig15223:203..480. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX291193 vs. ExPASy Swiss-Prot
Match: DCL4_ORYSJ (Endoribonuclease Dicer homolog 4 OS=Oryza sativa subsp. japonica GN=DCL4 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.645e-16
Identity = 41/88 (46.59%), Postives = 57/88 (64.77%), Query Frame = 1 
Query:    1 VESSLGAILLDSGFNLNTVWKIMLSFLDPILKFSNLQLNPIRELLELCNSYDLDLQFPS-LKKGGKFLAEAKVTGKDKDVFISACATN 261
            VES +GA+LLDSGFNLN VWK+ML  L P+L F+N+  NP+REL ELC  +  +L  P  +K  G++  + +V  K K +  +A   N
Sbjct: 1346 VESCIGAVLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEVNIKSKIIICTAANRN 1433
The following BLAST results are available for this feature:
BLAST of CX291193 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DCL4_ORYSJ2.645e-1646.59Endoribonuclease Dicer homolog 4 OS=Oryza sativa s... [more]
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Properties
Property NameValue
Genbank descriptionC03005B07SK OF2 Citrus clementina cDNA clone C03005B07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291193 ID=CX291193; Name=CX291193; organism=Citrus clementina; type=EST; length=278bp
GTAGAGTCTTCTTTGGGAGCCATCCTGCTTGATTCGGGGTTTAATTTGAA
TACTGTGTGGAAAATAATGTTATCCTTTTTGGATCCAATCTTGAAATTTT
CAAACTTGCAGCTTAATCCAATTAGGGAGCTACTGGAACTTTGCAACTCT
TATGACTTGGATTTGCAGTTTCCTAGCTTAAAGAAGGGTGGAAAATTTTT
AGCTGAAGCGAAAGTAACTGGGAAAGATAAAGATGTTTTTATATCTGCTT
GTGCAACAAACCTGAGCAGAAAAGAAGC
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