CX291206

Overview
NameCX291206
Unique NameCX291206
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length342
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: CP74_LINUS (Allene oxide synthase, chloroplastic OS=Linum usitatissimum GN=CYP74A PE=1 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.878e-47
Identity = 84/114 (73.68%), Postives = 105/114 (92.11%), Query Frame = 1
Query:    1 RDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFVGEGEKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            +D I+ SHEA+++VKEGEMLFGYQPFATKDPKIF++ EEFVADRFVGEG K++++V+WSNGPETE P+V NKQCAGKDFVV+A+RL +VELF RYDSFDI+VG S++G+S+TLT
Sbjct:  416 KDFILESHEAAYQVKEGEMLFGYQPFATKDPKIFDRPEEFVADRFVGEGVKLMEYVMWSNGPETETPSVANKQCAGKDFVVMAARLFVVELFKRYDSFDIEVGTSSLGASITLT 529          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: CP74A_ARATH (Allene oxide synthase, chloroplastic OS=Arabidopsis thaliana GN=CYP74A PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 7.837e-45
Identity = 82/115 (71.30%), Postives = 102/115 (88.70%), Query Frame = 1
Query:    1 RDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFVGE-GEKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            +DL+I SH+A+F+VK GEML+GYQP AT+DPKIF++A+EFV +RFVGE GEK+L+HVLWSNGPETE PTVGNKQCAGKDFVVL +RL ++E+F RYDSFDI+VG S +GSSV  +
Sbjct:  397 KDLVIESHDAAFKVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEGEKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDSFDIEVGTSPLGSSVNFS 511          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: C74A2_PARAR (Allene oxide synthase OS=Parthenium argentatum GN=CYP74A2 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 8.665e-44
Identity = 79/110 (71.82%), Postives = 100/110 (90.91%), Query Frame = 1
Query:   13 ISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFVGEGEKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            I SH+A+FEVK+GEMLFGYQPFATKDPK+F++ EE+V DRFVG+GE +LK+V WSNGPETE+PTV NKQCAGKDFVVL +RL ++ELF RYDSF+I++G+S +G++VTLT
Sbjct:  357 IESHDATFEVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFVGDGEALLKYVWWSNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSFEIELGESPLGAAVTLT 466          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: C74A1_ORYSJ (Allene oxide synthase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CYP74A1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 9.580e-43
Identity = 78/115 (67.83%), Postives = 100/115 (86.96%), Query Frame = 1
Query:    1 RDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFVGE-GEKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            RD+++ SH+  +EV+EGEMLFGYQP ATKDP++F + EE+V DRF+GE G ++L+HV+WSNGPET  PT+ +KQCAGKDFVVL +RLLLVELFLRYDSFD++VG S +GSSVT+T
Sbjct:  391 RDMVVESHDYGYEVREGEMLFGYQPMATKDPRVFARPEEYVPDRFLGEDGARLLRHVVWSNGPETAAPTLHDKQCAGKDFVVLVARLLLVELFLRYDSFDVEVGTSTLGSSVTVT 505          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: C74A2_ORYSJ (Allene oxide synthase 2 OS=Oryza sativa subsp. japonica GN=CYP74A2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.300e-35
Identity = 73/113 (64.60%), Postives = 88/113 (77.88%), Query Frame = 1
Query:    4 DLIISSHEASFEVKEGEMLFGYQPFATKDPKIF-EQAEEFVADRFVGE-GEKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVT 336
            DL I SH+ASF +K+GEMLFGYQP AT+DP++F   A EFV DRFVGE G K+L++V WSNG ETENP+V NKQC GK+ VVL  RLLLVELFLRYD+F  + GK  + + VT
Sbjct:  355 DLEIESHDASFAIKKGEMLFGYQPCATRDPRVFGATAREFVGDRFVGEEGRKLLQYVYWSNGRETENPSVDNKQCPGKNLVVLVGRLLLVELFLRYDTFTAEAGKKVVITGVT 467          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: C74A3_ORYSJ (Allene oxide synthase 3 OS=Oryza sativa subsp. japonica GN=CYP74A3 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.269e-33
Identity = 65/118 (55.08%), Postives = 87/118 (73.73%), Query Frame = 1
Query:    1 RDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFVGEG----EKMLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            RD+++ SH+A++EV++GEMLFGYQP AT+D K+F++A EFVADRFV  G      +L+HV+WSNGPET  P+ GNKQC GKD VV   RL++ ELF RYD+F   V ++ +   VT T
Sbjct:  375 RDMVVESHDAAYEVRKGEMLFGYQPLATRDEKVFDRAGEFVADRFVAGGAAGDRPLLEHVVWSNGPETRAPSEGNKQCPGKDMVVAVGRLMVAELFRRYDTFAADVVEAPVEPVVTFT 492          
BLAST of CX291206 vs. ExPASy Swiss-Prot
Match: C74A4_ORYSJ (Allene oxide synthase 4 OS=Oryza sativa subsp. japonica GN=CYP74A4 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.874e-30
Identity = 63/118 (53.39%), Postives = 85/118 (72.03%), Query Frame = 1
Query:    1 RDLIISSHEASFEVKEGEMLFGYQPFATKDPKIFEQAEEFVADRFV-GEGEK---MLKHVLWSNGPETENPTVGNKQCAGKDFVVLASRLLLVELFLRYDSFDIQVGKSAIGSSVTLT 342
            RD+++ SH+A++EV++GE+LFGYQP AT+D K+F++A EFV DRFV G G     +L+HV+WSNGPET  P+ GNKQC GKD VV   RL++  LF RYD+F   V +  +   VT T
Sbjct:  377 RDMVVESHDAAYEVRKGELLFGYQPLATRDEKVFDRAGEFVPDRFVSGAGSAARPLLEHVVWSNGPETGTPSEGNKQCPGKDMVVAVGRLMVAGLFRRYDTFAADVEELPLEPVVTFT 494          
The following BLAST results are available for this feature:
BLAST of CX291206 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
CP74_LINUS2.878e-4773.68Allene oxide synthase, chloroplastic OS=Linum usit... [more]
CP74A_ARATH7.837e-4571.30Allene oxide synthase, chloroplastic OS=Arabidopsi... [more]
C74A2_PARAR8.665e-4471.82Allene oxide synthase OS=Parthenium argentatum GN=... [more]
C74A1_ORYSJ9.580e-4367.83Allene oxide synthase 1, chloroplastic OS=Oryza sa... [more]
C74A2_ORYSJ3.300e-3564.60Allene oxide synthase 2 OS=Oryza sativa subsp. jap... [more]
C74A3_ORYSJ5.269e-3355.08Allene oxide synthase 3 OS=Oryza sativa subsp. jap... [more]
C74A4_ORYSJ1.874e-3053.39Allene oxide synthase 4 OS=Oryza sativa subsp. jap... [more]
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Properties
Property NameValue
Genbank descriptionC03005C12SK OF2 Citrus clementina cDNA clone C03005C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291206 ID=CX291206; Name=CX291206; organism=Citrus clementina; type=EST; length=342bp
AGAGACTTGATCATATCGAGCCACGAGGCGTCGTTTGAGGTCAAAGAAGG
AGAGATGTTGTTCGGGTACCAACCATTTGCAACAAAAGATCCGAAGATAT
TCGAGCAAGCGGAGGAGTTCGTGGCGGACCGATTTGTCGGNGAAGGTGAG
AAGATGCTCAAGCACGTGCTTTGGTCGAACGGTCCAGAGACAGAGAACCC
AACGGTTGGGAATAAACAGTGTGCAGGCAAAGATTTTGTTGTCCTGGCGT
CGAGGCTTCTGTTGGTGGAATTGTTTCTCCGATACGATTCTTTTGACATC
CAAGTCGGAAAATCGGCGATAGGATCTTCTGTTACTCTAACG
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