CX291217

Overview
NameCX291217
Unique NameCX291217
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length373
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15376 contig Ccv1_Contig15376:257..629. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291217 vs. ExPASy Swiss-Prot
Match: SSRA_ARATH (Translocon-associated protein subunit alpha OS=Arabidopsis thaliana GN=At2g21160 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 6.639e-44
Identity = 83/123 (67.48%), Postives = 100/123 (81.30%), Query Frame = 3
Query:    3 DGTFSPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIXASVHLPFDHSLLVXNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTI 371
            D   S  PGV+TVC+FPKNSA++V AGEETELLVG+KN+G++ V V+ I ASVHLP+DH LLV NLT    NNA++P S QATFPYIFAVS++LQPG FDLVG I+Y+V+  PYQS FYNGTI
Sbjct:   55 DMNLSSFPGVETVCVFPKNSAKLVPAGEETELLVGLKNEGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRLNNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIYDVEGKPYQSVFYNGTI 177          
BLAST of CX291217 vs. ExPASy Swiss-Prot
Match: SSRA_DICDI (Translocon-associated protein subunit alpha OS=Dictyostelium discoideum GN=ssr1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 42/119 (35.29%), Postives = 62/119 (52.10%), Query Frame = 3
Query:   15 SPAPGVDTVCIFPKNSARVVAAGEETELLVGMKNDGESSVNVIAIXASVHLPFDHSLLVXNLTGQAFNNATVPVSAQATFPYIFAVSKFLQPGTFDLVGSIVYEVDQHPYQSTFYNGTI 371
            +P   V    IFP N  +  AAG   E+LVG  N+ + ++N+  I AS++ P D S+ + N T   F  A V     AT  Y F  S++L+P  F L+ S+ Y+     +  TF+N TI
Sbjct:   34 TPTSDVSFSYIFPDNQDKNFAAGSVVEVLVGFTNNADKALNITHIFASLNHPQDFSVFIQNYTRGDFGIA-VEKGHHATLAYRFVPSEYLEPREFGLLISLEYQDGAQNFTQTFFNSTI 151          
The following BLAST results are available for this feature:
BLAST of CX291217 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SSRA_ARATH6.639e-4467.48Translocon-associated protein subunit alpha OS=Ara... [more]
SSRA_DICDI3.008e-1235.29Translocon-associated protein subunit alpha OS=Dic... [more]
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Properties
Property NameValue
Genbank descriptionC03005D12SK OF2 Citrus clementina cDNA clone C03005D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291217 ID=CX291217; Name=CX291217; organism=Citrus clementina; type=EST; length=373bp
GTGATGGGACTTTTAGCCCTGCTCCAGGAGTGGATACTGTCTGTATCTTC
CCTAAAAATAGCGCCCGAGTGGTGGCTGCTGGAGAAGAAACTGAACTACT
GGTTGGGATGAAAAATGATGGGGAGTCAAGCGTGAATGTGATTGCAATTC
ANGCCAGTGTTCATCTCCCTTTTGATCACAGTCTTTTGGTTCANAATCTC
ACTGGACAGGCCTTTAACAATGCAACTGTGCCGGTATCAGCTCAGGCTAC
CTTTCCATACATTTTTGCTGTCAGCAAGTTCTTGCAGCCTGGAACTTTTG
ATCTTGTGGGCTCCATTGTTTATGAGGTAGACCAGCATCCTTACCAAAGC
ACCTTCTACAATGGTACCATTGA
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