CX291231

Overview
NameCX291231
Unique NameCX291231
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Bos taurus GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 51/139 (36.69%), Postives = 77/139 (55.40%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFYLLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY-VHAPDKVL 443
            A +VKQDMPP GGY  I++ R  P+   S  ++    I     G++  +  +R+  + Q+E   + IAL PLL AE DR  L+ LR+N + E  +MK+V GWK     GE V+ T    + + P + E Y + A ++VL
Sbjct:    3 ASKVKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMKWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATVMKDVPGWKV----GESVFHTT---RWVTPMMGELYGLRASEEVL 134          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pongo pygmaeus GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFY-----LLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            A +VKQDMPP GGY  I++ R  P+     R L G  ++  G+G   Y     +  +R+  + Q+E   + IAL PLL AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:    3 ASKVKQDMPPPGGYGPIDYKRNLPR-----RGLSGYSMLALGIGTLIYGHWSMMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKV----GESVFHTT---RWVAPLIGELY 125          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Pan troglodytes GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFY-----LLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            A +VKQDMPP GGY  I++ R  P+     R L G  ++  G+G   Y     +  +R+  + Q+E   + IAL PLL AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:    3 ASKVKQDMPPPGGYGPIDYKRNLPR-----RGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKV----GESVFHTT---RWVPPLIGELY 125          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Homo sapiens GN=NDUFA13 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFY-----LLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            A +VKQDMPP GGY  I++ R  P+     R L G  ++  G+G   Y     +  +R+  + Q+E   + IAL PLL AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:    3 ASKVKQDMPPPGGYGPIDYKRNLPR-----RGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKV----GESVFHTT---RWVPPLIGELY 125          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Gorilla gorilla gorilla GN=NDUFA13 PE=2 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 50/135 (37.04%), Postives = 72/135 (53.33%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFY-----LLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            A +VKQDMPP GGY  I++ R  P+     R L G  ++  G+G   Y     +  +R+  + Q+E   + IAL PLL AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:    3 ASKVKQDMPPPGGYGPIDYKRNLPR-----RGLSGYSMLAIGIGTLIYGHWSIMKWNRERRRLQIEDFEARIALLPLLQAETDRRTLQMLRENLEEEAIIMKDVPDWKV----GESVFHTT---RWVPPLIGELY 125          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_MACFA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Macaca fascicularis GN=NDUFA13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 48/133 (36.09%), Postives = 70/133 (52.63%), Query Frame = 3
Query:   36 RVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFY-----LLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            +VKQDMPP GGY  I++ R  P+     R L G  ++  G+G   Y     +  +R+  + Q+E   + IAL PL  AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:   24 KVKQDMPPPGGYGPIDYKRNLPR-----RGLSGYSMLAIGIGTLVYGHWSIMKWNRERRRLQIEDFEARIALMPLFQAETDRRTLQMLRENLEEEAIIMKDVPDWKV----GESVFHTT---RWVPPLIGELY 144          
BLAST of CX291231 vs. ExPASy Swiss-Prot
Match: NDUAD_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 OS=Mus musculus GN=Ndufa13 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 44/130 (33.85%), Postives = 68/130 (52.31%), Query Frame = 3
Query:   30 AERVKQDMPPKGGYRKINFARVFPKPFASSRALVGTYIVCTGVGWYFYLLNDRQVDKYQVESRSSIIALTPLLDAEADREYLKQLRKNRDAEEKLMKNVKGWKTGTLYGEPVYKTVGKDKLIEPGLNEYY 419
            A +VKQDMPP GGY  I++ R  P+   S  ++    I     G++  +  +++  +  +E   + IAL PL  AE DR  L+ LR+N + E  +MK+V  WK     GE V+ T    + + P + E Y
Sbjct:    3 ASKVKQDMPPPGGYGPIDYKRNLPRRGLSGYSMFAVGIGALIFGYWRMMRWNQERRRLLIEDLEARIALMPLFQAEKDRRTLQILRENLEEEAIIMKDVPNWKV----GESVFHTT---RWVPPLIGEMY 125          
The following BLAST results are available for this feature:
BLAST of CX291231 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUAD_BOVIN3.859e-1536.69NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PONPY7.278e-1437.04NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_PANTR7.278e-1437.04NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_HUMAN7.278e-1437.04NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_GORGO7.278e-1437.04NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MACFA8.047e-1336.09NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUAD_MOUSE8.897e-1233.85NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
back to top
Properties
Property NameValue
Genbank descriptionC03005F04SK OF2 Citrus clementina cDNA clone C03005F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291231 ID=CX291231; Name=CX291231; organism=Citrus clementina; type=EST; length=663bp
GATATAACTTAGAAGTTATCATGGCTACTGCTGAGCGGGTAAAACAAGAT
ATGCCTCCTAAAGGTGGCTACCGAAAGATAAATTTTGCTCGAGTGTTTCC
TAAACCATTTGCCAGTAGTAGAGCATTGGTTGGTACGTATATAGTTTGCA
CTGGGGTTGGTTGGTACTTTTACCTTTTAAACGATCGACAAGTTGACAAA
TATCAAGTCGAATCACGCAGTTCAATTATTGCTCTAACACCACTATTAGA
TGCTGAAGCTGACAGAGAATATCTAAAACAATTAAGAAAAAATCGTGATG
CTGAAGAAAAATTAATGAAAAATGTCAAAGGATGGAAAACCGGTACTTTG
TATGGTGAGCCTGTATACAAGACAGTTGGTAAAGATAAACTCATTGAACC
TGGCTTGAATGAATATTATGTACATGCTCCTGACAAAGTTTTGTTTGACC
GAGCCTACTGGCATAAATATTTATAAACAAGTATCTATGAAATTTGTACA
ACAATGAAAGTCATTACAATACTTGTCATATTACATGTGTTTAGATTCAA
TAAAAATGTATATTTTTTTTTCTGATAGTAACATTATTAAAAATAGAAAT
AATAATTTAAATATGTTTATTGAATATTTTGTATTTGTAGTATATCATTA
TTTAAAAGAACTA
back to top